Hb_002997_170

Information

Type -
Description -
Location Contig2997: 184653-189395
Sequence    

Annotation

kegg
ID pop:POPTR_0006s19520g
description POPTRDRAFT_561357; ubiquitin family protein
nr
ID XP_011033381.1
description PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A9PCX0
description Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Gene Ontology
ID GO:0005515
description polyubiquitin 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31318: 184380-189364 , PASA_asmbl_31320: 188141-188396
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_170 0.0 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
2 Hb_000977_130 0.0553784881 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
3 Hb_000905_190 0.0609020497 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
4 Hb_001741_140 0.0609977026 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_000997_020 0.0724598774 - - PREDICTED: uncharacterized protein LOC105629694 [Jatropha curcas]
6 Hb_168918_020 0.0749085975 - - pectin acetylesterase, putative [Ricinus communis]
7 Hb_012340_030 0.0779247604 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
8 Hb_000165_030 0.0794283062 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
9 Hb_010128_130 0.0817450253 - - PREDICTED: G patch domain-containing protein 8 isoform X1 [Jatropha curcas]
10 Hb_000107_390 0.0818952923 - - PREDICTED: uncharacterized protein LOC100245962 [Vitis vinifera]
11 Hb_000172_370 0.0846158495 - - -
12 Hb_118419_020 0.0862682948 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Vitis vinifera]
13 Hb_000270_840 0.0866428512 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
14 Hb_000017_120 0.0866764955 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
15 Hb_004204_200 0.0881648962 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
16 Hb_005928_060 0.0885530803 - - DNA-directed RNA polymerase III 25 kD polypeptide, putative [Ricinus communis]
17 Hb_005843_110 0.0889306552 - - Caltractin, putative [Ricinus communis]
18 Hb_000345_560 0.089737607 - - -
19 Hb_148912_010 0.0909907538 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000847_070 0.0918213942 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]

Gene co-expression network

sample Hb_002997_170 Hb_002997_170 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_000905_190 Hb_000905_190 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_000690_080 Hb_000690_080 Hb_000977_130--Hb_000690_080 Hb_000977_130--Hb_001741_140 Hb_009767_120 Hb_009767_120 Hb_000977_130--Hb_009767_120 Hb_011794_090 Hb_011794_090 Hb_000977_130--Hb_011794_090 Hb_000107_050 Hb_000107_050 Hb_000977_130--Hb_000107_050 Hb_003642_060 Hb_003642_060 Hb_000905_190--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_000905_190--Hb_001741_140 Hb_010128_130 Hb_010128_130 Hb_001741_140--Hb_010128_130 Hb_143629_010 Hb_143629_010 Hb_001741_140--Hb_143629_010 Hb_001741_140--Hb_000997_020 Hb_001741_140--Hb_000107_050 Hb_000997_020--Hb_000905_190 Hb_000997_020--Hb_143629_010 Hb_000997_020--Hb_005928_060 Hb_000997_020--Hb_003453_020 Hb_168918_020--Hb_012340_030 Hb_000107_390 Hb_000107_390 Hb_168918_020--Hb_000107_390 Hb_000017_120 Hb_000017_120 Hb_168918_020--Hb_000017_120 Hb_001776_110 Hb_001776_110 Hb_168918_020--Hb_001776_110 Hb_118419_020 Hb_118419_020 Hb_168918_020--Hb_118419_020 Hb_001823_100 Hb_001823_100 Hb_012340_030--Hb_001823_100 Hb_012340_030--Hb_000107_390 Hb_012340_030--Hb_000017_120 Hb_002272_250 Hb_002272_250 Hb_012340_030--Hb_002272_250 Hb_012340_030--Hb_118419_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
132.337 20.7346 43.1822 26.0384 133.669 155.185
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.4811 121.737 77.8654 28.7773 15.5117

CAGE analysis