Hb_004374_010

Information

Type -
Description -
Location Contig4374: 46625-50330
Sequence    

Annotation

kegg
ID rcu:RCOM_0300840
description pin2-interacting protein x1, putative
nr
ID XP_012086819.1
description PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JN15
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42488: 47784-48902
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004374_010 0.0 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
2 Hb_001956_120 0.0689371143 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000015_010 0.0718637493 - - -
4 Hb_000062_230 0.0771012548 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
5 Hb_017098_030 0.0819063968 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
6 Hb_002044_090 0.0841698115 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
7 Hb_011537_040 0.0868165965 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
8 Hb_000188_190 0.0879109543 - - -
9 Hb_001437_300 0.0887822026 - - -
10 Hb_000714_020 0.0918179138 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
11 Hb_001514_020 0.092762003 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
12 Hb_005271_070 0.092809005 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
13 Hb_000976_270 0.0928091076 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
14 Hb_004502_030 0.0936762805 - - unknown [Populus trichocarpa]
15 Hb_004096_170 0.0982094269 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
16 Hb_005741_020 0.100031135 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
17 Hb_002851_060 0.1010552604 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
18 Hb_000284_200 0.1013011966 - - -
19 Hb_003352_050 0.1014946039 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
20 Hb_000179_250 0.1018791634 - - PREDICTED: WD repeat-containing protein 61-like [Citrus sinensis]

Gene co-expression network

sample Hb_004374_010 Hb_004374_010 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_017098_030 Hb_017098_030 Hb_004374_010--Hb_017098_030 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040 Hb_000347_080 Hb_000347_080 Hb_001956_120--Hb_000347_080 Hb_000976_270 Hb_000976_270 Hb_001956_120--Hb_000976_270 Hb_001956_120--Hb_011537_040 Hb_001956_120--Hb_000062_230 Hb_001663_110 Hb_001663_110 Hb_001956_120--Hb_001663_110 Hb_000284_200 Hb_000284_200 Hb_000015_010--Hb_000284_200 Hb_000015_010--Hb_002044_090 Hb_000188_190 Hb_000188_190 Hb_000015_010--Hb_000188_190 Hb_000015_010--Hb_000062_230 Hb_160818_010 Hb_160818_010 Hb_000015_010--Hb_160818_010 Hb_000062_230--Hb_002044_090 Hb_002377_040 Hb_002377_040 Hb_000062_230--Hb_002377_040 Hb_005754_020 Hb_005754_020 Hb_000062_230--Hb_005754_020 Hb_003352_050 Hb_003352_050 Hb_000062_230--Hb_003352_050 Hb_004813_010 Hb_004813_010 Hb_000062_230--Hb_004813_010 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_001437_300 Hb_001437_300 Hb_017098_030--Hb_001437_300 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_004502_030 Hb_004502_030 Hb_017098_030--Hb_004502_030 Hb_002044_090--Hb_005754_020 Hb_002044_090--Hb_002377_040 Hb_000176_140 Hb_000176_140 Hb_002044_090--Hb_000176_140 Hb_000179_250 Hb_000179_250 Hb_002044_090--Hb_000179_250 Hb_002044_090--Hb_003352_050 Hb_005271_070 Hb_005271_070 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_000282_150 Hb_000282_150 Hb_011537_040--Hb_000282_150 Hb_011537_040--Hb_002851_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.3197 9.33812 8.72365 3.2563 56.0205 52.785
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.8946 26.823 14.309 9.68596 6.16072

CAGE analysis