Hb_017098_030

Information

Type -
Description -
Location Contig17098: 19183-29505
Sequence    

Annotation

kegg
ID vvi:100263772
description protein LOW PSII ACCUMULATION 3, chloroplastic
nr
ID XP_006368505.1
description hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
swissprot
ID Q8H0W0
description Protein LOW PSII ACCUMULATION 3, chloroplastic OS=Arabidopsis thaliana GN=LPA3 PE=1 SV=1
trembl
ID B9N9X9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03560g PE=4 SV=1
Gene Ontology
ID GO:0009570
description protein low psii accumulation chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15973: 19214-29486
cDNA
(Sanger)
(ID:Location)		 040_O21.ab1: 19214-25215

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017098_030 0.0 - - hypothetical protein POPTR_0001s03560g [Populus trichocarpa]
2 Hb_004374_010 0.0819063968 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
3 Hb_003055_050 0.0836533309 - - hypothetical protein POPTR_0011s04510g [Populus trichocarpa]
4 Hb_001437_300 0.0905295614 - - -
5 Hb_006261_040 0.0942262535 - - PREDICTED: uncharacterized protein LOC105646602 [Jatropha curcas]
6 Hb_002851_060 0.1018333427 - - Clathrin light chain 2 -like protein [Gossypium arboreum]
7 Hb_004502_030 0.1033544957 - - unknown [Populus trichocarpa]
8 Hb_000003_090 0.1042384194 - - -
9 Hb_000062_230 0.1054518493 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
10 Hb_002377_040 0.107051467 - - serine/threonine protein kinase, putative [Ricinus communis]
11 Hb_000345_560 0.1075060302 - - -
12 Hb_001956_120 0.1096815493 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000176_110 0.1135606779 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
14 Hb_003352_050 0.1142671012 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
15 Hb_002955_030 0.1155420669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000015_010 0.1161850128 - - -
17 Hb_006637_060 0.1166883434 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
18 Hb_003376_100 0.1175789669 - - PREDICTED: uncharacterized protein LOC105642192 [Jatropha curcas]
19 Hb_000284_200 0.1190223189 - - -
20 Hb_002044_090 0.1211161449 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_017098_030 Hb_017098_030 Hb_004374_010 Hb_004374_010 Hb_017098_030--Hb_004374_010 Hb_003055_050 Hb_003055_050 Hb_017098_030--Hb_003055_050 Hb_001437_300 Hb_001437_300 Hb_017098_030--Hb_001437_300 Hb_006261_040 Hb_006261_040 Hb_017098_030--Hb_006261_040 Hb_002851_060 Hb_002851_060 Hb_017098_030--Hb_002851_060 Hb_004502_030 Hb_004502_030 Hb_017098_030--Hb_004502_030 Hb_001956_120 Hb_001956_120 Hb_004374_010--Hb_001956_120 Hb_000015_010 Hb_000015_010 Hb_004374_010--Hb_000015_010 Hb_000062_230 Hb_000062_230 Hb_004374_010--Hb_000062_230 Hb_002044_090 Hb_002044_090 Hb_004374_010--Hb_002044_090 Hb_011537_040 Hb_011537_040 Hb_004374_010--Hb_011537_040 Hb_000345_560 Hb_000345_560 Hb_003055_050--Hb_000345_560 Hb_000085_340 Hb_000085_340 Hb_003055_050--Hb_000085_340 Hb_007992_030 Hb_007992_030 Hb_003055_050--Hb_007992_030 Hb_002955_030 Hb_002955_030 Hb_003055_050--Hb_002955_030 Hb_001493_100 Hb_001493_100 Hb_003055_050--Hb_001493_100 Hb_001437_300--Hb_004374_010 Hb_000183_070 Hb_000183_070 Hb_001437_300--Hb_000183_070 Hb_006501_150 Hb_006501_150 Hb_001437_300--Hb_006501_150 Hb_001437_300--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_001437_300--Hb_001514_020 Hb_006261_040--Hb_000345_560 Hb_012675_090 Hb_012675_090 Hb_006261_040--Hb_012675_090 Hb_006261_040--Hb_004502_030 Hb_033080_010 Hb_033080_010 Hb_006261_040--Hb_033080_010 Hb_006261_040--Hb_001437_300 Hb_044662_040 Hb_044662_040 Hb_002851_060--Hb_044662_040 Hb_002851_060--Hb_011537_040 Hb_002851_060--Hb_004374_010 Hb_005271_070 Hb_005271_070 Hb_002851_060--Hb_005271_070 Hb_178345_010 Hb_178345_010 Hb_002851_060--Hb_178345_010 Hb_000847_070 Hb_000847_070 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_004502_030--Hb_000345_560 Hb_003633_130 Hb_003633_130 Hb_004502_030--Hb_003633_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5345 1.07289 2.45817 1.06124 12.0205 13.0741
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.83857 6.64698 3.69307 1.4333 2.78695

CAGE analysis