Hb_003633_130

Information

Type -
Description -
Location Contig3633: 113604-115882
Sequence    

Annotation

kegg
ID rcu:RCOM_1433620
description 50S ribosomal protein L18, putative
nr
ID XP_012088960.1
description PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
swissprot
ID A8IAP8
description 50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571) GN=rplR PE=3 SV=1
trembl
ID A0A067JV63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23267 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37370: 113660-116028
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_130 0.0 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
2 Hb_119583_010 0.0798799365 - - 60S ribosomal protein L12A [Hevea brasiliensis]
3 Hb_004502_030 0.080623587 - - unknown [Populus trichocarpa]
4 Hb_002942_070 0.0900801059 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
5 Hb_007992_030 0.0979264213 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105646951 [Jatropha curcas]
6 Hb_007632_250 0.1011454928 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000847_070 0.1026561937 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
8 Hb_001623_370 0.107735815 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000622_100 0.1079521148 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
10 Hb_005735_030 0.1087008179 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000345_560 0.1107905833 - - -
12 Hb_004295_020 0.1125228088 - - thioredoxin II-type 1 [Hevea brasiliensis]
13 Hb_003106_130 0.112589236 - - PREDICTED: uncharacterized protein LOC105640436 [Jatropha curcas]
14 Hb_000977_130 0.1148411104 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
15 Hb_000617_320 0.115304779 - - 40S ribosomal protein S21B [Hevea brasiliensis]
16 Hb_002997_170 0.1154830889 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
17 Hb_001514_020 0.1156921992 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
18 Hb_007441_340 0.1171679347 - - protein with unknown function [Ricinus communis]
19 Hb_000172_120 0.118970547 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
20 Hb_134226_010 0.1221658675 - - 40S ribosomal protein S21e, putative [Ricinus communis]

Gene co-expression network

sample Hb_003633_130 Hb_003633_130 Hb_119583_010 Hb_119583_010 Hb_003633_130--Hb_119583_010 Hb_004502_030 Hb_004502_030 Hb_003633_130--Hb_004502_030 Hb_002942_070 Hb_002942_070 Hb_003633_130--Hb_002942_070 Hb_007992_030 Hb_007992_030 Hb_003633_130--Hb_007992_030 Hb_007632_250 Hb_007632_250 Hb_003633_130--Hb_007632_250 Hb_000847_070 Hb_000847_070 Hb_003633_130--Hb_000847_070 Hb_119583_010--Hb_007632_250 Hb_003106_130 Hb_003106_130 Hb_119583_010--Hb_003106_130 Hb_119583_010--Hb_004502_030 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170 Hb_004502_030--Hb_000847_070 Hb_004502_030--Hb_007992_030 Hb_001514_020 Hb_001514_020 Hb_004502_030--Hb_001514_020 Hb_004096_170 Hb_004096_170 Hb_004502_030--Hb_004096_170 Hb_000345_560 Hb_000345_560 Hb_004502_030--Hb_000345_560 Hb_000172_120 Hb_000172_120 Hb_002942_070--Hb_000172_120 Hb_000327_210 Hb_000327_210 Hb_002942_070--Hb_000327_210 Hb_002942_070--Hb_004502_030 Hb_004813_010 Hb_004813_010 Hb_002942_070--Hb_004813_010 Hb_000062_230 Hb_000062_230 Hb_002942_070--Hb_000062_230 Hb_007992_030--Hb_000847_070 Hb_007992_030--Hb_000345_560 Hb_007992_030--Hb_001514_020 Hb_001493_100 Hb_001493_100 Hb_007992_030--Hb_001493_100 Hb_007992_030--Hb_004813_010 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_000847_070--Hb_004096_170 Hb_000847_070--Hb_001514_020 Hb_134226_010 Hb_134226_010 Hb_000847_070--Hb_134226_010 Hb_006637_060 Hb_006637_060 Hb_000847_070--Hb_006637_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
82.6295 15.4156 19.0517 14.0979 82.962 120.374
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.7164 75.4784 28.3632 9.3594 1.63927

CAGE analysis