Hb_000282_150

Information

Type -
Description -
Location Contig282: 208261-211698
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24530g
description POPTRDRAFT_1081412; hypothetical protein
nr
ID XP_012077286.1
description PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
swissprot
ID Q66GS2
description Probable beta-1,3-galactosyltransferase 12 OS=Arabidopsis thaliana GN=B3GALT12 PE=2 SV=1
trembl
ID A0A067KGG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07669 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable beta- -galactosyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29533: 208336-211453 , PASA_asmbl_29534: 208321-211644
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000282_150 0.0 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
2 Hb_001140_080 0.0729962114 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
3 Hb_000500_290 0.0757949495 - - bromodomain-containing protein, putative [Ricinus communis]
4 Hb_011537_040 0.0888601599 - - PREDICTED: uncharacterized protein LOC105646229 [Jatropha curcas]
5 Hb_000270_450 0.0917770346 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
6 Hb_012807_120 0.0963792733 - - metal ion binding protein, putative [Ricinus communis]
7 Hb_004232_010 0.0993653326 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
8 Hb_009615_110 0.099480304 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
9 Hb_006478_070 0.0995994224 - - PREDICTED: uncharacterized protein LOC105649957 [Jatropha curcas]
10 Hb_000684_180 0.1005947542 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
11 Hb_002955_010 0.101902011 - - PREDICTED: Werner syndrome ATP-dependent helicase homolog [Jatropha curcas]
12 Hb_001009_050 0.103267044 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
13 Hb_005028_010 0.1053748165 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
14 Hb_003352_050 0.1054516436 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
15 Hb_001946_260 0.1061088313 - - PREDICTED: ribosome biogenesis regulatory protein homolog isoform X1 [Jatropha curcas]
16 Hb_000318_140 0.1075596752 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
17 Hb_018663_020 0.1078490121 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
18 Hb_000320_440 0.1083030561 - - PREDICTED: tRNA wybutosine-synthesizing protein 2/3/4 isoform X1 [Jatropha curcas]
19 Hb_001956_120 0.1128313401 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003734_130 0.11332513 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]

Gene co-expression network

sample Hb_000282_150 Hb_000282_150 Hb_001140_080 Hb_001140_080 Hb_000282_150--Hb_001140_080 Hb_000500_290 Hb_000500_290 Hb_000282_150--Hb_000500_290 Hb_011537_040 Hb_011537_040 Hb_000282_150--Hb_011537_040 Hb_000270_450 Hb_000270_450 Hb_000282_150--Hb_000270_450 Hb_012807_120 Hb_012807_120 Hb_000282_150--Hb_012807_120 Hb_004232_010 Hb_004232_010 Hb_000282_150--Hb_004232_010 Hb_001140_080--Hb_012807_120 Hb_001140_080--Hb_000270_450 Hb_006478_070 Hb_006478_070 Hb_001140_080--Hb_006478_070 Hb_003506_040 Hb_003506_040 Hb_001140_080--Hb_003506_040 Hb_005028_010 Hb_005028_010 Hb_001140_080--Hb_005028_010 Hb_005271_070 Hb_005271_070 Hb_000500_290--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_000500_290--Hb_001348_140 Hb_000500_290--Hb_004232_010 Hb_009615_110 Hb_009615_110 Hb_000500_290--Hb_009615_110 Hb_000500_290--Hb_011537_040 Hb_011537_040--Hb_005271_070 Hb_000258_410 Hb_000258_410 Hb_011537_040--Hb_000258_410 Hb_001956_120 Hb_001956_120 Hb_011537_040--Hb_001956_120 Hb_004374_010 Hb_004374_010 Hb_011537_040--Hb_004374_010 Hb_002851_060 Hb_002851_060 Hb_011537_040--Hb_002851_060 Hb_001009_050 Hb_001009_050 Hb_000270_450--Hb_001009_050 Hb_025048_040 Hb_025048_040 Hb_000270_450--Hb_025048_040 Hb_000270_450--Hb_009615_110 Hb_005016_030 Hb_005016_030 Hb_000270_450--Hb_005016_030 Hb_000320_440 Hb_000320_440 Hb_000270_450--Hb_000320_440 Hb_012807_120--Hb_006478_070 Hb_000365_350 Hb_000365_350 Hb_012807_120--Hb_000365_350 Hb_012807_120--Hb_000320_440 Hb_000088_180 Hb_000088_180 Hb_012807_120--Hb_000088_180 Hb_000573_040 Hb_000573_040 Hb_012807_120--Hb_000573_040 Hb_011609_030 Hb_011609_030 Hb_004232_010--Hb_011609_030 Hb_005741_020 Hb_005741_020 Hb_004232_010--Hb_005741_020 Hb_000714_020 Hb_000714_020 Hb_004232_010--Hb_000714_020 Hb_004070_030 Hb_004070_030 Hb_004232_010--Hb_004070_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.5851 16.6097 7.8311 9.0797 74.4477 97.1963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.8175 18.573 18.3619 22.0142 5.29943

CAGE analysis