Hb_004070_030

Information

Type -
Description -
Location Contig4070: 60476-66051
Sequence    

Annotation

kegg
ID rcu:RCOM_1196120
description hypothetical protein
nr
ID XP_012065106.1
description PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
swissprot
ID Q32L81
description Phosphatidate cytidylyltransferase, mitochondrial OS=Bos taurus GN=TAMM41 PE=2 SV=1
trembl
ID B9SQ77
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1196120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40329: 62102-65444 , PASA_asmbl_40330: 62966-63267 , PASA_asmbl_40331: 65466-65992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004070_030 0.0 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
2 Hb_004232_010 0.0976249202 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
3 Hb_005741_020 0.1097052574 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
4 Hb_000442_100 0.1113059074 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
5 Hb_011609_030 0.1115261445 - - conserved hypothetical protein 13 [Hevea brasiliensis]
6 Hb_000714_020 0.1227481603 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
7 Hb_005271_070 0.1269193612 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
8 Hb_002078_430 0.1309091647 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
9 Hb_005565_030 0.1322651171 - - PREDICTED: uncharacterized protein LOC105633107 isoform X1 [Jatropha curcas]
10 Hb_001804_060 0.1334200656 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
11 Hb_001493_100 0.1334459664 - - PREDICTED: ubiquitin-conjugating enzyme E2 34-like [Jatropha curcas]
12 Hb_001623_370 0.1355641316 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002619_010 0.138514191 - - -
14 Hb_001514_020 0.1407820053 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
15 Hb_006637_060 0.141693417 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
16 Hb_007632_250 0.1419949244 - - conserved hypothetical protein [Ricinus communis]
17 Hb_084934_010 0.1423013373 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
18 Hb_025048_030 0.142832709 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
19 Hb_000510_100 0.143033739 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
20 Hb_002660_140 0.1433712725 - - hypothetical protein POPTR_0006s13060g [Populus trichocarpa]

Gene co-expression network

sample Hb_004070_030 Hb_004070_030 Hb_004232_010 Hb_004232_010 Hb_004070_030--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_004070_030--Hb_005741_020 Hb_000442_100 Hb_000442_100 Hb_004070_030--Hb_000442_100 Hb_011609_030 Hb_011609_030 Hb_004070_030--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_004070_030--Hb_000714_020 Hb_005271_070 Hb_005271_070 Hb_004070_030--Hb_005271_070 Hb_004232_010--Hb_011609_030 Hb_000500_290 Hb_000500_290 Hb_004232_010--Hb_000500_290 Hb_004232_010--Hb_005741_020 Hb_004232_010--Hb_000714_020 Hb_000282_150 Hb_000282_150 Hb_004232_010--Hb_000282_150 Hb_005741_020--Hb_005271_070 Hb_001623_370 Hb_001623_370 Hb_005741_020--Hb_001623_370 Hb_005741_020--Hb_011609_030 Hb_005741_020--Hb_000714_020 Hb_001956_120 Hb_001956_120 Hb_005741_020--Hb_001956_120 Hb_004724_100 Hb_004724_100 Hb_000442_100--Hb_004724_100 Hb_003086_110 Hb_003086_110 Hb_000442_100--Hb_003086_110 Hb_001818_080 Hb_001818_080 Hb_000442_100--Hb_001818_080 Hb_034585_030 Hb_034585_030 Hb_000442_100--Hb_034585_030 Hb_015026_120 Hb_015026_120 Hb_000442_100--Hb_015026_120 Hb_000617_320 Hb_000617_320 Hb_000442_100--Hb_000617_320 Hb_011609_030--Hb_000714_020 Hb_011609_030--Hb_001623_370 Hb_011930_010 Hb_011930_010 Hb_011609_030--Hb_011930_010 Hb_011609_030--Hb_001956_120 Hb_000714_020--Hb_001623_370 Hb_001493_100 Hb_001493_100 Hb_000714_020--Hb_001493_100 Hb_001514_020 Hb_001514_020 Hb_000714_020--Hb_001514_020 Hb_002619_010 Hb_002619_010 Hb_000714_020--Hb_002619_010 Hb_004374_010 Hb_004374_010 Hb_000714_020--Hb_004374_010 Hb_011537_040 Hb_011537_040 Hb_005271_070--Hb_011537_040 Hb_000258_410 Hb_000258_410 Hb_005271_070--Hb_000258_410 Hb_164010_020 Hb_164010_020 Hb_005271_070--Hb_164010_020 Hb_005271_070--Hb_000500_290 Hb_005271_070--Hb_004374_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4505 7.23107 3.19276 1.47273 12.8562 31.5526
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4071 14.1584 6.20975 4.16737 0.730675

CAGE analysis