Hb_000442_100

Information

Type -
Description -
Location Contig442: 115554-117789
Sequence    

Annotation

kegg
ID rcu:RCOM_0688330
description hypothetical protein
nr
ID XP_012091210.1
description PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
swissprot
ID F4IH31
description Staphylococcal-like nuclease CAN2 OS=Arabidopsis thaliana GN=CAN2 PE=1 SV=1
trembl
ID A0A067JQC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03370 PE=4 SV=1
Gene Ontology
ID GO:0003676
description staphylococcal-like nuclease can2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000442_100 0.0 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
2 Hb_004724_100 0.0967763472 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
3 Hb_003086_110 0.1054716818 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
4 Hb_001818_080 0.1064069311 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
5 Hb_034585_030 0.1070175258 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
6 Hb_015026_120 0.1077532514 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
7 Hb_000617_320 0.1085898306 - - 40S ribosomal protein S21B [Hevea brasiliensis]
8 Hb_004070_030 0.1113059074 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_007166_050 0.1116912461 - - -
10 Hb_002259_030 0.1138165462 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002263_010 0.1138727586 - - hypothetical protein CICLE_v10012259mg [Citrus clementina]
12 Hb_000442_160 0.1139988019 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
13 Hb_004374_200 0.1140131952 - - putative GMP synthase [Oxybasis rubra]
14 Hb_001804_060 0.1152130173 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
15 Hb_000510_090 0.1156148548 - - 40S ribosomal protein S15 [Morus notabilis]
16 Hb_007632_250 0.1176572706 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001437_040 0.1187524662 - - PREDICTED: ATPase GET3-like [Vitis vinifera]
18 Hb_084934_010 0.1214463977 - - hypothetical protein JCGZ_22225 [Jatropha curcas]
19 Hb_134226_010 0.121566666 - - 40S ribosomal protein S21e, putative [Ricinus communis]
20 Hb_030312_040 0.1221411669 - - hypothetical protein JCGZ_04876 [Jatropha curcas]

Gene co-expression network

sample Hb_000442_100 Hb_000442_100 Hb_004724_100 Hb_004724_100 Hb_000442_100--Hb_004724_100 Hb_003086_110 Hb_003086_110 Hb_000442_100--Hb_003086_110 Hb_001818_080 Hb_001818_080 Hb_000442_100--Hb_001818_080 Hb_034585_030 Hb_034585_030 Hb_000442_100--Hb_034585_030 Hb_015026_120 Hb_015026_120 Hb_000442_100--Hb_015026_120 Hb_000617_320 Hb_000617_320 Hb_000442_100--Hb_000617_320 Hb_003874_020 Hb_003874_020 Hb_004724_100--Hb_003874_020 Hb_000510_090 Hb_000510_090 Hb_004724_100--Hb_000510_090 Hb_000371_080 Hb_000371_080 Hb_004724_100--Hb_000371_080 Hb_000175_070 Hb_000175_070 Hb_004724_100--Hb_000175_070 Hb_024650_050 Hb_024650_050 Hb_004724_100--Hb_024650_050 Hb_000200_210 Hb_000200_210 Hb_004724_100--Hb_000200_210 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_003086_020 Hb_003086_020 Hb_003086_110--Hb_003086_020 Hb_118977_020 Hb_118977_020 Hb_003086_110--Hb_118977_020 Hb_000272_100 Hb_000272_100 Hb_003086_110--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_003086_110--Hb_000617_320 Hb_030312_040 Hb_030312_040 Hb_001818_080--Hb_030312_040 Hb_061908_010 Hb_061908_010 Hb_001818_080--Hb_061908_010 Hb_002232_170 Hb_002232_170 Hb_001818_080--Hb_002232_170 Hb_004374_200 Hb_004374_200 Hb_001818_080--Hb_004374_200 Hb_005565_030 Hb_005565_030 Hb_001818_080--Hb_005565_030 Hb_015941_030 Hb_015941_030 Hb_001818_080--Hb_015941_030 Hb_034585_030--Hb_000510_090 Hb_034585_030--Hb_007166_050 Hb_134226_010 Hb_134226_010 Hb_034585_030--Hb_134226_010 Hb_034585_030--Hb_003086_110 Hb_000442_160 Hb_000442_160 Hb_034585_030--Hb_000442_160 Hb_133271_020 Hb_133271_020 Hb_034585_030--Hb_133271_020 Hb_003777_270 Hb_003777_270 Hb_015026_120--Hb_003777_270 Hb_002762_060 Hb_002762_060 Hb_015026_120--Hb_002762_060 Hb_006447_010 Hb_006447_010 Hb_015026_120--Hb_006447_010 Hb_001248_050 Hb_001248_050 Hb_015026_120--Hb_001248_050 Hb_001840_080 Hb_001840_080 Hb_015026_120--Hb_001840_080 Hb_004109_200 Hb_004109_200 Hb_015026_120--Hb_004109_200 Hb_000617_320--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000617_320--Hb_001019_090 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_000617_320--Hb_118977_020 Hb_004297_100 Hb_004297_100 Hb_000617_320--Hb_004297_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.3059 7.34522 3.19059 3.63629 11.676 37.7941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.4573 23.5854 10.9407 8.92697 1.8781

CAGE analysis