Hb_015026_120

Information

Type -
Description -
Location Contig15026: 73267-75127
Sequence    

Annotation

kegg
ID -
description -
nr
ID EMS49727.1
description hypothetical protein TRIUR3_03502 [Triticum urartu]
swissprot
ID -
description -
trembl
ID M7YQL9
description Uncharacterized protein OS=Triticum urartu GN=TRIUR3_03502 PE=4 SV=1
Gene Ontology
ID GO:0008270
description quinone oxidoreductase pig3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12603: 73885-74546 , PASA_asmbl_12604: 75481-77861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_120 0.0 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
2 Hb_003777_270 0.0828455471 - - 60S ribosomal protein L3B [Hevea brasiliensis]
3 Hb_002762_060 0.0859525875 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
4 Hb_006447_010 0.0869541597 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
5 Hb_001248_050 0.0890724323 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
6 Hb_001840_080 0.0894048696 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
7 Hb_004109_200 0.0929767395 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
8 Hb_002272_250 0.0982267306 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_030312_040 0.0984778004 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
10 Hb_004221_010 0.1008424372 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
11 Hb_009111_050 0.1008998102 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]
12 Hb_001804_060 0.1010915131 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
13 Hb_001030_120 0.10267977 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
14 Hb_010449_020 0.1041857588 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
15 Hb_012340_030 0.1045325111 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
16 Hb_000853_110 0.1057323566 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
17 Hb_001243_050 0.1057441438 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
18 Hb_000442_160 0.1060786483 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
19 Hb_000032_570 0.1064720875 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
20 Hb_133271_020 0.1066462901 - - prohibitin, putative [Ricinus communis]

Gene co-expression network

sample Hb_015026_120 Hb_015026_120 Hb_003777_270 Hb_003777_270 Hb_015026_120--Hb_003777_270 Hb_002762_060 Hb_002762_060 Hb_015026_120--Hb_002762_060 Hb_006447_010 Hb_006447_010 Hb_015026_120--Hb_006447_010 Hb_001248_050 Hb_001248_050 Hb_015026_120--Hb_001248_050 Hb_001840_080 Hb_001840_080 Hb_015026_120--Hb_001840_080 Hb_004109_200 Hb_004109_200 Hb_015026_120--Hb_004109_200 Hb_004223_090 Hb_004223_090 Hb_003777_270--Hb_004223_090 Hb_033642_010 Hb_033642_010 Hb_003777_270--Hb_033642_010 Hb_000099_240 Hb_000099_240 Hb_003777_270--Hb_000099_240 Hb_009111_050 Hb_009111_050 Hb_003777_270--Hb_009111_050 Hb_000032_570 Hb_000032_570 Hb_003777_270--Hb_000032_570 Hb_133271_020 Hb_133271_020 Hb_003777_270--Hb_133271_020 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_001246_100 Hb_001246_100 Hb_006447_010--Hb_001246_100 Hb_001243_050 Hb_001243_050 Hb_006447_010--Hb_001243_050 Hb_000442_160 Hb_000442_160 Hb_006447_010--Hb_000442_160 Hb_001030_120 Hb_001030_120 Hb_006447_010--Hb_001030_120 Hb_006447_010--Hb_133271_020 Hb_012340_030 Hb_012340_030 Hb_006447_010--Hb_012340_030 Hb_001248_050--Hb_004221_010 Hb_000877_060 Hb_000877_060 Hb_001248_050--Hb_000877_060 Hb_000085_270 Hb_000085_270 Hb_001248_050--Hb_000085_270 Hb_001138_050 Hb_001138_050 Hb_001248_050--Hb_001138_050 Hb_001248_050--Hb_004109_200 Hb_000483_350 Hb_000483_350 Hb_001248_050--Hb_000483_350 Hb_000120_800 Hb_000120_800 Hb_001840_080--Hb_000120_800 Hb_001047_020 Hb_001047_020 Hb_001840_080--Hb_001047_020 Hb_002215_050 Hb_002215_050 Hb_001840_080--Hb_002215_050 Hb_003638_140 Hb_003638_140 Hb_001840_080--Hb_003638_140 Hb_000749_150 Hb_000749_150 Hb_001840_080--Hb_000749_150 Hb_005306_110 Hb_005306_110 Hb_001840_080--Hb_005306_110 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_004109_200--Hb_000483_350 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_004109_200--Hb_005306_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41397 0.909495 0.59473 0.214057 1.322 2.75002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.21276 1.86758 1.55716 0.820354 0.259523

CAGE analysis