Hb_000085_270

Information

Type -
Description -
Location Contig85: 246889-249487
Sequence    

Annotation

kegg
ID mdm:103430074
description pirin-like protein
nr
ID XP_008366427.1
description PREDICTED: pirin-like protein [Malus domestica]
swissprot
ID Q9LPS9
description Pirin-like protein At1g50590 OS=Arabidopsis thaliana GN=At1g50590 PE=2 SV=1
trembl
ID W9RCB7
description Uncharacterized protein OS=Morus notabilis GN=L484_009535 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60366: 246876-249414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000085_270 0.0 - - PREDICTED: pirin-like protein [Malus domestica]
2 Hb_001248_050 0.0829095401 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
3 Hb_000483_350 0.0841226903 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
4 Hb_004109_200 0.0948388564 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
5 Hb_004221_010 0.0961117428 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
6 Hb_004055_010 0.0977530418 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_004920_040 0.0992321112 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
8 Hb_010449_020 0.1009940594 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
9 Hb_000768_050 0.1048398357 - - hypothetical protein RCOM_0845740 [Ricinus communis]
10 Hb_003106_070 0.1103992021 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
11 Hb_002762_060 0.112832403 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
12 Hb_006775_080 0.1132606551 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
13 Hb_024835_030 0.113706767 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_000078_180 0.1157568187 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
15 Hb_003185_020 0.1166767829 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
16 Hb_000373_270 0.1180139032 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
17 Hb_005489_130 0.1188628513 - - calmodulin, putative [Ricinus communis]
18 Hb_004012_010 0.1191746328 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
19 Hb_015026_120 0.1196027663 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
20 Hb_008959_030 0.1204745664 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_000085_270 Hb_000085_270 Hb_001248_050 Hb_001248_050 Hb_000085_270--Hb_001248_050 Hb_000483_350 Hb_000483_350 Hb_000085_270--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_000085_270--Hb_004109_200 Hb_004221_010 Hb_004221_010 Hb_000085_270--Hb_004221_010 Hb_004055_010 Hb_004055_010 Hb_000085_270--Hb_004055_010 Hb_004920_040 Hb_004920_040 Hb_000085_270--Hb_004920_040 Hb_001248_050--Hb_004221_010 Hb_000877_060 Hb_000877_060 Hb_001248_050--Hb_000877_060 Hb_001138_050 Hb_001138_050 Hb_001248_050--Hb_001138_050 Hb_001248_050--Hb_004109_200 Hb_001248_050--Hb_000483_350 Hb_000483_350--Hb_004109_200 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_000483_350--Hb_004055_010 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_002762_060 Hb_002762_060 Hb_004221_010--Hb_002762_060 Hb_004221_010--Hb_004055_010 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_004221_010--Hb_000877_060 Hb_008959_030 Hb_008959_030 Hb_004055_010--Hb_008959_030 Hb_004055_010--Hb_004109_200 Hb_001655_070 Hb_001655_070 Hb_004055_010--Hb_001655_070 Hb_004055_010--Hb_002762_060 Hb_004920_040--Hb_002762_060 Hb_024835_030 Hb_024835_030 Hb_004920_040--Hb_024835_030 Hb_004920_040--Hb_001138_050 Hb_004012_010 Hb_004012_010 Hb_004920_040--Hb_004012_010 Hb_006775_080 Hb_006775_080 Hb_004920_040--Hb_006775_080 Hb_004920_040--Hb_004221_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.4796 17.7242 3.78621 6.05407 18.1283 31.2888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
37.3755 29.5812 16.1645 9.00064 6.49429

CAGE analysis