Hb_008959_030

Information

Type -
Description -
Location Contig8959: 36413-40474
Sequence    

Annotation

kegg
ID rcu:RCOM_1096880
description hypothetical protein
nr
ID XP_012091460.1
description PREDICTED: universal stress protein A-like protein [Jatropha curcas]
swissprot
ID P87132
description Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
trembl
ID A0A067JMW6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21330 PE=4 SV=1
Gene Ontology
ID GO:0005634
description adenine nucleotide alpha hydrolases-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61756: 36238-40072 , PASA_asmbl_61758: 38985-39339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008959_030 0.0 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
2 Hb_004055_010 0.0592325025 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_001655_070 0.0875218608 - - PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
4 Hb_000483_350 0.0948134644 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
5 Hb_004109_200 0.0974954504 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
6 Hb_005928_110 0.0982408045 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
7 Hb_004221_010 0.1022490567 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
8 Hb_002762_060 0.1026001729 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
9 Hb_000237_080 0.1040717539 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
10 Hb_030312_040 0.1081448323 - - hypothetical protein JCGZ_04876 [Jatropha curcas]
11 Hb_004012_010 0.1086538951 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
12 Hb_004920_040 0.1092241235 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
13 Hb_009615_150 0.1099561774 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
14 Hb_000156_130 0.1100368825 - - hypothetical protein JCGZ_04605 [Jatropha curcas]
15 Hb_000798_060 0.112602483 transcription factor TF Family: PHD -
16 Hb_021254_030 0.1128782951 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
17 Hb_001318_030 0.1143942181 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
18 Hb_002375_020 0.1162867818 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
19 Hb_000923_020 0.1174903184 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
20 Hb_000078_180 0.1180344609 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]

Gene co-expression network

sample Hb_008959_030 Hb_008959_030 Hb_004055_010 Hb_004055_010 Hb_008959_030--Hb_004055_010 Hb_001655_070 Hb_001655_070 Hb_008959_030--Hb_001655_070 Hb_000483_350 Hb_000483_350 Hb_008959_030--Hb_000483_350 Hb_004109_200 Hb_004109_200 Hb_008959_030--Hb_004109_200 Hb_005928_110 Hb_005928_110 Hb_008959_030--Hb_005928_110 Hb_004221_010 Hb_004221_010 Hb_008959_030--Hb_004221_010 Hb_004055_010--Hb_004221_010 Hb_004055_010--Hb_000483_350 Hb_004055_010--Hb_004109_200 Hb_004055_010--Hb_001655_070 Hb_002762_060 Hb_002762_060 Hb_004055_010--Hb_002762_060 Hb_000059_210 Hb_000059_210 Hb_001655_070--Hb_000059_210 Hb_002400_070 Hb_002400_070 Hb_001655_070--Hb_002400_070 Hb_001655_070--Hb_004221_010 Hb_015941_030 Hb_015941_030 Hb_001655_070--Hb_015941_030 Hb_000483_350--Hb_004109_200 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_000085_270 Hb_000085_270 Hb_000483_350--Hb_000085_270 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_000109_160 Hb_000109_160 Hb_005928_110--Hb_000109_160 Hb_009615_150 Hb_009615_150 Hb_005928_110--Hb_009615_150 Hb_001610_110 Hb_001610_110 Hb_005928_110--Hb_001610_110 Hb_086639_070 Hb_086639_070 Hb_005928_110--Hb_086639_070 Hb_003994_180 Hb_003994_180 Hb_005928_110--Hb_003994_180 Hb_000621_080 Hb_000621_080 Hb_005928_110--Hb_000621_080 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_004221_010--Hb_002762_060 Hb_001248_050 Hb_001248_050 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_000877_060 Hb_000877_060 Hb_004221_010--Hb_000877_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
212.721 168.917 17.5432 63.1754 146.53 230.609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
239.292 202.247 155.487 63.249 13.3945

CAGE analysis