Hb_024835_030

Information

Type -
Description -
Location Contig24835: 34550-39358
Sequence    

Annotation

kegg
ID rcu:RCOM_1690980
description ubiquitin-conjugating enzyme E2, putative (EC:6.3.2.19)
nr
ID XP_002509917.1
description ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
swissprot
ID Q94F47
description Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1
trembl
ID J3RV96
description Ubiquitin-conjugating enzyme E2 OS=Vernicia fordii GN=UBC2 PE=2 SV=1
Gene Ontology
ID GO:0005622
description ubiquitin-conjugating enzyme e2-17 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25842: 34565-39461 , PASA_asmbl_25843: 34611-39465 , PASA_asmbl_25844: 34597-39465 , PASA_asmbl_25845: 37543-37850 , PASA_asmbl_25846: 36270-36413 , PASA_asmbl_25847: 35684-36088
cDNA
(Sanger)
(ID:Location)		 003_E15.ab1: 34640-39465 , 003_J16.ab1: 34640-39461 , 007_G03.ab1: 34630-39461 , 009_N11.ab1: 34623-39464 , 021_P01.ab1: 34631-39465 , 030_I18.ab1: 34597-39465 , 030_L21.ab1: 34612-34859 , 035_A01.ab1: 34630-39461 , 036_K14.ab1: 34604-39461 , 038_F01.ab1: 34621-39465 , 046_F08.ab1: 34618-39461 , 047_F05.ab1: 34669-39465 , 047_O11.ab1: 39294-39465 , 050_G04.ab1: 34915-39465 , 050_H10.ab1: 38231-39449 , 053_M06.ab1: 34613-34859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024835_030 0.0 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
2 Hb_004012_010 0.0555884875 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
3 Hb_002762_060 0.060594905 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
4 Hb_009711_030 0.0678978177 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
5 Hb_004920_040 0.0679901256 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
6 Hb_022250_040 0.0740717127 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
7 Hb_000056_340 0.0760937729 - - 60S ribosomal protein L34A [Hevea brasiliensis]
8 Hb_000392_270 0.0765490099 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
9 Hb_159558_030 0.0788557579 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
10 Hb_001138_050 0.0799900591 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
11 Hb_021068_050 0.0802072099 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
12 Hb_006775_080 0.0820739295 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
13 Hb_007672_010 0.0827664206 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
14 Hb_000376_050 0.0834057692 - - polyadenylate-binding protein, putative [Ricinus communis]
15 Hb_001951_110 0.0838187101 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
16 Hb_000371_080 0.0843074055 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
17 Hb_004662_030 0.0846689321 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
18 Hb_158092_070 0.0852036035 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_023732_070 0.0852991483 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
20 Hb_000045_130 0.0858807601 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]

Gene co-expression network

sample Hb_024835_030 Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_024835_030--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_024835_030--Hb_002762_060 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_004920_040 Hb_004920_040 Hb_024835_030--Hb_004920_040 Hb_022250_040 Hb_022250_040 Hb_024835_030--Hb_022250_040 Hb_000056_340 Hb_000056_340 Hb_024835_030--Hb_000056_340 Hb_026198_050 Hb_026198_050 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004012_010--Hb_004920_040 Hb_003185_020 Hb_003185_020 Hb_004012_010--Hb_003185_020 Hb_004012_010--Hb_002762_060 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_004221_010 Hb_004221_010 Hb_002762_060--Hb_004221_010 Hb_002762_060--Hb_004920_040 Hb_000720_120 Hb_000720_120 Hb_002762_060--Hb_000720_120 Hb_158092_070 Hb_158092_070 Hb_002762_060--Hb_158092_070 Hb_009711_030--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_009711_030--Hb_125000_010 Hb_000371_080 Hb_000371_080 Hb_009711_030--Hb_000371_080 Hb_001008_060 Hb_001008_060 Hb_009711_030--Hb_001008_060 Hb_001824_070 Hb_001824_070 Hb_009711_030--Hb_001824_070 Hb_002097_110 Hb_002097_110 Hb_009711_030--Hb_002097_110 Hb_001138_050 Hb_001138_050 Hb_004920_040--Hb_001138_050 Hb_004920_040--Hb_006775_080 Hb_004920_040--Hb_004221_010 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_004662_030 Hb_004662_030 Hb_022250_040--Hb_004662_030 Hb_002603_100 Hb_002603_100 Hb_022250_040--Hb_002603_100 Hb_022250_040--Hb_125000_010 Hb_007101_150 Hb_007101_150 Hb_000056_340--Hb_007101_150 Hb_003018_200 Hb_003018_200 Hb_000056_340--Hb_003018_200 Hb_007672_010 Hb_007672_010 Hb_000056_340--Hb_007672_010 Hb_001828_090 Hb_001828_090 Hb_000056_340--Hb_001828_090 Hb_000056_340--Hb_004012_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1770.96 557.114 239.783 399.839 1154.33 1380.3
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1645.93 1942.88 1121.9 543.403 158.761

CAGE analysis