Hb_007672_010

Information

Type -
Description -
Location Contig7672: 12777-16492
Sequence    

Annotation

kegg
ID pop:POPTR_0005s14160g
description hypothetical protein
nr
ID XP_012079182.1
description PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
swissprot
ID Q2GII5
description 50S ribosomal protein L25 OS=Anaplasma phagocytophilum (strain HZ) GN=rplY PE=3 SV=1
trembl
ID A0A067KHZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12351 PE=4 SV=1
Gene Ontology
ID GO:0006412
description ribosomal protein l25 gln-trna anti-codon-binding domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57450: 12777-16511
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007672_010 0.0 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
2 Hb_007101_130 0.0611900441 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000376_050 0.0719056188 - - polyadenylate-binding protein, putative [Ricinus communis]
4 Hb_021650_030 0.0734664523 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
5 Hb_000056_340 0.0743888066 - - 60S ribosomal protein L34A [Hevea brasiliensis]
6 Hb_002890_280 0.0784622421 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
7 Hb_002078_450 0.0785584219 - - nuclear transport factor, putative [Ricinus communis]
8 Hb_023386_080 0.079319873 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
9 Hb_000086_570 0.0794983395 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_000091_090 0.0805180904 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
11 Hb_000975_290 0.0817462741 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
12 Hb_007101_150 0.081920282 - - hypothetical protein CICLE_v10033984mg [Citrus clementina]
13 Hb_024835_030 0.0827664206 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_003018_200 0.0827976093 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
15 Hb_000883_050 0.0831448447 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
16 Hb_001427_120 0.0833077221 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
17 Hb_022250_040 0.0841704566 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
18 Hb_002603_100 0.0852561558 - - ATATH9, putative [Ricinus communis]
19 Hb_023732_070 0.0861489069 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
20 Hb_001008_060 0.0865323364 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_007672_010 Hb_007672_010 Hb_007101_130 Hb_007101_130 Hb_007672_010--Hb_007101_130 Hb_000376_050 Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_027472_180 Hb_027472_180 Hb_007101_130--Hb_027472_180 Hb_008453_090 Hb_008453_090 Hb_007101_130--Hb_008453_090 Hb_001184_110 Hb_001184_110 Hb_007101_130--Hb_001184_110 Hb_007101_130--Hb_000376_050 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_002603_100 Hb_002603_100 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050 Hb_000091_090 Hb_000091_090 Hb_021650_030--Hb_000091_090 Hb_002411_200 Hb_002411_200 Hb_021650_030--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_021650_030--Hb_000086_570 Hb_021650_030--Hb_002078_450 Hb_014720_080 Hb_014720_080 Hb_021650_030--Hb_014720_080 Hb_001881_020 Hb_001881_020 Hb_021650_030--Hb_001881_020 Hb_007101_150 Hb_007101_150 Hb_000056_340--Hb_007101_150 Hb_000056_340--Hb_003018_200 Hb_001828_090 Hb_001828_090 Hb_000056_340--Hb_001828_090 Hb_024835_030 Hb_024835_030 Hb_000056_340--Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_000056_340--Hb_004012_010 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_001157_030 Hb_001157_030 Hb_002890_280--Hb_001157_030 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_009382_020 Hb_009382_020 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060 Hb_071736_020 Hb_071736_020 Hb_002078_450--Hb_071736_020 Hb_005686_110 Hb_005686_110 Hb_002078_450--Hb_005686_110 Hb_002078_450--Hb_000086_570 Hb_009711_030 Hb_009711_030 Hb_002078_450--Hb_009711_030 Hb_001718_100 Hb_001718_100 Hb_002078_450--Hb_001718_100 Hb_022250_040 Hb_022250_040 Hb_002078_450--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
99.8302 33.4658 20.4126 25.9809 69.8699 85.3418
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
109.685 147.122 116.423 47.4262 7.92711

CAGE analysis