Hb_001157_030

Information

Type -
Description -
Location Contig1157: 19075-21975
Sequence    

Annotation

kegg
ID cit:102612005
description pentatricopeptide repeat-containing protein At5g66500, mitochondrial-like
nr
ID XP_012091083.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
swissprot
ID Q9FJY9
description Pentatricopeptide repeat-containing protein At5g66500, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E38 PE=2 SV=1
trembl
ID A0A067JQG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_N05r.ab1: 18927-19454

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001157_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
2 Hb_002890_280 0.0830978348 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
3 Hb_009382_020 0.0863834787 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_003861_080 0.0877010235 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
5 Hb_001981_090 0.1018259719 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
6 Hb_000805_090 0.1042167429 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
7 Hb_006501_040 0.1044603884 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
8 Hb_005062_070 0.1052270073 - - RNA splicing protein mrs2, mitochondrial, putative [Ricinus communis]
9 Hb_003747_030 0.1116799402 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
10 Hb_000975_290 0.1133939657 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
11 Hb_000300_620 0.1144924098 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
12 Hb_004046_010 0.114683161 - - PREDICTED: uncharacterized protein LOC105632478 isoform X2 [Jatropha curcas]
13 Hb_000483_350 0.114852807 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
14 Hb_000116_470 0.1150915637 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
15 Hb_178968_110 0.1161662036 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
16 Hb_002794_030 0.1175239348 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
17 Hb_000784_090 0.118369912 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
18 Hb_000665_040 0.1188762421 - - PREDICTED: stress response protein NST1-like [Jatropha curcas]
19 Hb_000110_160 0.1192169812 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003025_090 0.1201150289 - - hypothetical protein B456_002G103400 [Gossypium raimondii]

Gene co-expression network

sample Hb_001157_030 Hb_001157_030 Hb_002890_280 Hb_002890_280 Hb_001157_030--Hb_002890_280 Hb_009382_020 Hb_009382_020 Hb_001157_030--Hb_009382_020 Hb_003861_080 Hb_003861_080 Hb_001157_030--Hb_003861_080 Hb_001981_090 Hb_001981_090 Hb_001157_030--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_001157_030--Hb_000805_090 Hb_006501_040 Hb_006501_040 Hb_001157_030--Hb_006501_040 Hb_000975_290 Hb_000975_290 Hb_002890_280--Hb_000975_290 Hb_007672_010 Hb_007672_010 Hb_002890_280--Hb_007672_010 Hb_005062_070 Hb_005062_070 Hb_002890_280--Hb_005062_070 Hb_002890_280--Hb_009382_020 Hb_000754_060 Hb_000754_060 Hb_002890_280--Hb_000754_060 Hb_000300_620 Hb_000300_620 Hb_009382_020--Hb_000300_620 Hb_000138_040 Hb_000138_040 Hb_009382_020--Hb_000138_040 Hb_000483_350 Hb_000483_350 Hb_009382_020--Hb_000483_350 Hb_009382_020--Hb_005062_070 Hb_004046_010 Hb_004046_010 Hb_003861_080--Hb_004046_010 Hb_000110_160 Hb_000110_160 Hb_003861_080--Hb_000110_160 Hb_001635_100 Hb_001635_100 Hb_003861_080--Hb_001635_100 Hb_007943_080 Hb_007943_080 Hb_003861_080--Hb_007943_080 Hb_003861_080--Hb_000805_090 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001366_220 Hb_001366_220 Hb_001981_090--Hb_001366_220 Hb_000809_040 Hb_000809_040 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_001981_090--Hb_000805_090 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_002357_040 Hb_000805_090--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_000805_090--Hb_011174_070 Hb_000179_210 Hb_000179_210 Hb_006501_040--Hb_000179_210 Hb_000059_220 Hb_000059_220 Hb_006501_040--Hb_000059_220 Hb_178968_110 Hb_178968_110 Hb_006501_040--Hb_178968_110 Hb_003266_130 Hb_003266_130 Hb_006501_040--Hb_003266_130 Hb_000297_200 Hb_000297_200 Hb_006501_040--Hb_000297_200 Hb_000457_150 Hb_000457_150 Hb_006501_040--Hb_000457_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.6881 6.72714 1.51746 1.52285 10.022 16.5046
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.143 16.2909 21.6405 4.46702 2.9141

CAGE analysis