Hb_007101_130

Information

Type -
Description -
Location Contig7101: 67957-72055
Sequence    

Annotation

kegg
ID rcu:RCOM_0394320
description hypothetical protein
nr
ID XP_002531408.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZI9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0394320 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55244: 67865-72058
cDNA
(Sanger)
(ID:Location)		 037_L07.ab1: 68012-72058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007101_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007672_010 0.0611900441 - - PREDICTED: uncharacterized protein LOC105639669 isoform X1 [Jatropha curcas]
3 Hb_003018_200 0.0731144158 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
4 Hb_027472_180 0.0757099932 - - hypothetical protein L484_016229 [Morus notabilis]
5 Hb_008453_090 0.076377333 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
6 Hb_001184_110 0.0786510428 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
7 Hb_000376_050 0.0812537405 - - polyadenylate-binding protein, putative [Ricinus communis]
8 Hb_000030_100 0.0819550506 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
9 Hb_000883_050 0.0833492313 - - PREDICTED: 60S ribosomal protein L37a-like, partial [Solanum tuberosum]
10 Hb_016065_010 0.0836139244 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
11 Hb_005694_080 0.0839605086 - - DNA-directed RNA polymerase III, putative [Ricinus communis]
12 Hb_002097_110 0.0868306381 - - ankyrin repeat-containing protein, putative [Ricinus communis]
13 Hb_000221_220 0.0872961618 - - PREDICTED: 40S ribosomal protein S6 [Jatropha curcas]
14 Hb_002311_350 0.0879918569 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
15 Hb_000531_020 0.0881329617 - - PREDICTED: uncharacterized protein At4g28440-like [Populus euphratica]
16 Hb_011465_040 0.0891444102 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
17 Hb_005618_140 0.0894017371 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
18 Hb_008289_060 0.0895739176 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
19 Hb_000853_110 0.0912819197 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
20 Hb_000056_340 0.0914679757 - - 60S ribosomal protein L34A [Hevea brasiliensis]

Gene co-expression network

sample Hb_007101_130 Hb_007101_130 Hb_007672_010 Hb_007672_010 Hb_007101_130--Hb_007672_010 Hb_003018_200 Hb_003018_200 Hb_007101_130--Hb_003018_200 Hb_027472_180 Hb_027472_180 Hb_007101_130--Hb_027472_180 Hb_008453_090 Hb_008453_090 Hb_007101_130--Hb_008453_090 Hb_001184_110 Hb_001184_110 Hb_007101_130--Hb_001184_110 Hb_000376_050 Hb_000376_050 Hb_007101_130--Hb_000376_050 Hb_007672_010--Hb_000376_050 Hb_021650_030 Hb_021650_030 Hb_007672_010--Hb_021650_030 Hb_000056_340 Hb_000056_340 Hb_007672_010--Hb_000056_340 Hb_002890_280 Hb_002890_280 Hb_007672_010--Hb_002890_280 Hb_002078_450 Hb_002078_450 Hb_007672_010--Hb_002078_450 Hb_001863_390 Hb_001863_390 Hb_003018_200--Hb_001863_390 Hb_002603_100 Hb_002603_100 Hb_003018_200--Hb_002603_100 Hb_003018_200--Hb_008453_090 Hb_007101_150 Hb_007101_150 Hb_003018_200--Hb_007101_150 Hb_003018_200--Hb_000056_340 Hb_002097_110 Hb_002097_110 Hb_027472_180--Hb_002097_110 Hb_000703_140 Hb_000703_140 Hb_027472_180--Hb_000703_140 Hb_027472_180--Hb_000376_050 Hb_004662_030 Hb_004662_030 Hb_027472_180--Hb_004662_030 Hb_007426_230 Hb_007426_230 Hb_027472_180--Hb_007426_230 Hb_004951_040 Hb_004951_040 Hb_008453_090--Hb_004951_040 Hb_016065_010 Hb_016065_010 Hb_008453_090--Hb_016065_010 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_008453_090--Hb_055062_030 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130 Hb_006846_110 Hb_006846_110 Hb_001184_110--Hb_006846_110 Hb_001184_110--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_001184_110--Hb_000671_150 Hb_000935_050 Hb_000935_050 Hb_001184_110--Hb_000935_050 Hb_001184_110--Hb_007672_010 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_000376_050--Hb_002603_100 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_021068_050 Hb_021068_050 Hb_000376_050--Hb_021068_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2614 7.3838 5.17877 4.53555 18.0953 21.043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.619 38.2736 27.9441 14.0024 3.77796

CAGE analysis