Hb_000671_150

Information

Type -
Description -
Location Contig671: 230748-234350
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04280g
description POPTRDRAFT_728715; Signal recognition particle 19 kDa family protein
nr
ID XP_012084174.1
description PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
swissprot
ID P49964
description Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1
trembl
ID A0A067JVS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 19 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53434: 230822-234324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_150 0.0 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
2 Hb_001881_020 0.0600758752 - - clathrin binding protein, putative [Ricinus communis]
3 Hb_000205_270 0.0734022431 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
4 Hb_000193_290 0.0770257049 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
5 Hb_001109_020 0.077136181 - - conserved hypothetical protein [Ricinus communis]
6 Hb_008289_060 0.0779941423 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
7 Hb_003018_190 0.0791881379 - - PREDICTED: pentatricopeptide repeat-containing protein At4g31070, mitochondrial [Jatropha curcas]
8 Hb_016065_010 0.0792390909 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
9 Hb_001691_210 0.0799401643 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
10 Hb_000030_100 0.0819869588 - - PREDICTED: short-chain type dehydrogenase/reductase isoform X2 [Jatropha curcas]
11 Hb_006846_110 0.0825878783 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61800 [Jatropha curcas]
12 Hb_131864_040 0.0827175635 - - PREDICTED: uncharacterized protein LOC105649406 isoform X1 [Jatropha curcas]
13 Hb_021650_030 0.083645107 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
14 Hb_000086_570 0.0855171826 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
15 Hb_008453_090 0.0856616116 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
16 Hb_000009_160 0.0864862942 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
17 Hb_000089_160 0.0870356752 - - 60S ribosomal protein L5B [Hevea brasiliensis]
18 Hb_000239_010 0.0889475699 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_007943_090 0.0897727526 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
20 Hb_001141_280 0.089782474 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Vitis vinifera]

Gene co-expression network

sample Hb_000671_150 Hb_000671_150 Hb_001881_020 Hb_001881_020 Hb_000671_150--Hb_001881_020 Hb_000205_270 Hb_000205_270 Hb_000671_150--Hb_000205_270 Hb_000193_290 Hb_000193_290 Hb_000671_150--Hb_000193_290 Hb_001109_020 Hb_001109_020 Hb_000671_150--Hb_001109_020 Hb_008289_060 Hb_008289_060 Hb_000671_150--Hb_008289_060 Hb_003018_190 Hb_003018_190 Hb_000671_150--Hb_003018_190 Hb_021650_030 Hb_021650_030 Hb_001881_020--Hb_021650_030 Hb_000091_090 Hb_000091_090 Hb_001881_020--Hb_000091_090 Hb_020178_070 Hb_020178_070 Hb_001881_020--Hb_020178_070 Hb_002411_200 Hb_002411_200 Hb_001881_020--Hb_002411_200 Hb_000086_570 Hb_000086_570 Hb_001881_020--Hb_000086_570 Hb_016065_010 Hb_016065_010 Hb_000205_270--Hb_016065_010 Hb_000009_160 Hb_000009_160 Hb_000205_270--Hb_000009_160 Hb_000205_270--Hb_001109_020 Hb_005488_010 Hb_005488_010 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_008453_090 Hb_008453_090 Hb_000193_290--Hb_008453_090 Hb_006949_040 Hb_006949_040 Hb_000193_290--Hb_006949_040 Hb_055062_030 Hb_055062_030 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_000193_290--Hb_016065_010 Hb_001829_060 Hb_001829_060 Hb_001109_020--Hb_001829_060 Hb_000046_110 Hb_000046_110 Hb_001109_020--Hb_000046_110 Hb_003927_130 Hb_003927_130 Hb_001109_020--Hb_003927_130 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_008289_060--Hb_055062_030 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_131864_040 Hb_131864_040 Hb_003018_190--Hb_131864_040 Hb_000997_400 Hb_000997_400 Hb_003018_190--Hb_000997_400 Hb_002603_160 Hb_002603_160 Hb_003018_190--Hb_002603_160 Hb_001141_280 Hb_001141_280 Hb_003018_190--Hb_001141_280 Hb_003018_190--Hb_005488_010 Hb_006846_110 Hb_006846_110 Hb_003018_190--Hb_006846_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.1323 17.7249 7.63705 15.7712 25.5898 52.1614
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.7967 73.0995 77.4785 29.8951 8.73595

CAGE analysis