Hb_006949_040

Information

Type -
Description -
Location Contig6949: 31875-34817
Sequence    

Annotation

kegg
ID rcu:RCOM_0706330
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_002516100.1
description protein phosphatase 2c, putative [Ricinus communis]
swissprot
ID Q9CAJ0
description Protein phosphatase 2C 16 OS=Arabidopsis thaliana GN=HAB1 PE=1 SV=1
trembl
ID B9RQT1
description Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0706330 PE=3 SV=1
Gene Ontology
ID GO:0004722
description abscisic acid insensitivity 1b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54552: 30810-30941 , PASA_asmbl_54553: 31444-32171
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006949_040 0.0 - - protein phosphatase 2c, putative [Ricinus communis]
2 Hb_006949_050 0.0566047 - - unknown [Lotus japonicus]
3 Hb_000193_290 0.067861168 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
4 Hb_061802_020 0.0787263852 - - zinc finger family protein [Populus trichocarpa]
5 Hb_000554_020 0.0809839976 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
6 Hb_000030_150 0.0820298064 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
7 Hb_001671_020 0.0882648561 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
8 Hb_055062_030 0.0894939334 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
9 Hb_004128_060 0.0900270924 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
10 Hb_000457_150 0.0912621816 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
11 Hb_000567_260 0.0947122767 - - BnaA09g41440D [Brassica napus]
12 Hb_006922_110 0.0955366324 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
13 Hb_005289_030 0.0957097324 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
14 Hb_004324_370 0.0957572607 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
15 Hb_000503_050 0.0972631854 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 1-like [Gossypium raimondii]
16 Hb_000510_130 0.0983019565 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_007380_070 0.098941779 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_189003_080 0.1003224481 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
19 Hb_000571_120 0.100477238 - - importin beta-1, putative [Ricinus communis]
20 Hb_001048_020 0.1006133268 - - PREDICTED: E3 ubiquitin-protein ligase FANCL isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006949_040 Hb_006949_040 Hb_006949_050 Hb_006949_050 Hb_006949_040--Hb_006949_050 Hb_000193_290 Hb_000193_290 Hb_006949_040--Hb_000193_290 Hb_061802_020 Hb_061802_020 Hb_006949_040--Hb_061802_020 Hb_000554_020 Hb_000554_020 Hb_006949_040--Hb_000554_020 Hb_000030_150 Hb_000030_150 Hb_006949_040--Hb_000030_150 Hb_001671_020 Hb_001671_020 Hb_006949_040--Hb_001671_020 Hb_006949_050--Hb_000554_020 Hb_000457_150 Hb_000457_150 Hb_006949_050--Hb_000457_150 Hb_006949_050--Hb_001671_020 Hb_006949_050--Hb_000193_290 Hb_004324_370 Hb_004324_370 Hb_006949_050--Hb_004324_370 Hb_008453_090 Hb_008453_090 Hb_000193_290--Hb_008453_090 Hb_000671_150 Hb_000671_150 Hb_000193_290--Hb_000671_150 Hb_055062_030 Hb_055062_030 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_016065_010 Hb_016065_010 Hb_000193_290--Hb_016065_010 Hb_061802_020--Hb_000030_150 Hb_000049_120 Hb_000049_120 Hb_061802_020--Hb_000049_120 Hb_001195_690 Hb_001195_690 Hb_061802_020--Hb_001195_690 Hb_061802_020--Hb_001671_020 Hb_020178_070 Hb_020178_070 Hb_061802_020--Hb_020178_070 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_002909_070 Hb_002909_070 Hb_000030_150--Hb_002909_070 Hb_003787_020 Hb_003787_020 Hb_000030_150--Hb_003787_020 Hb_000920_240 Hb_000920_240 Hb_000030_150--Hb_000920_240 Hb_002890_280 Hb_002890_280 Hb_000030_150--Hb_002890_280 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3645 16.944 4.91028 9.03117 11.5593 28.3957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1437 30.0086 31.0574 9.32663 7.10121

CAGE analysis