Hb_061802_020

Information

Type -
Description -
Location Contig61802: 16702-17622
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02910g
description POPTRDRAFT_734690; zinc finger family protein
nr
ID XP_002323210.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9IHK2
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0016s02910g PE=4 SV=1
Gene Ontology
ID GO:0005515
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51316: 3765-17997 , PASA_asmbl_51318: 15343-15752
cDNA
(Sanger)
(ID:Location)		 051_F10.ab1: 3765-17253

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061802_020 0.0 - - zinc finger family protein [Populus trichocarpa]
2 Hb_000030_150 0.0514727412 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_006949_040 0.0787263852 - - protein phosphatase 2c, putative [Ricinus communis]
4 Hb_000049_120 0.0860065462 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 [Jatropha curcas]
5 Hb_001195_690 0.0896488037 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
6 Hb_001671_020 0.0912202286 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
7 Hb_020178_070 0.0926112473 - - Protein Z, putative [Ricinus communis]
8 Hb_006949_050 0.0926975739 - - unknown [Lotus japonicus]
9 Hb_005941_040 0.0944126735 - - PREDICTED: CASP-like protein 5A2 [Jatropha curcas]
10 Hb_003787_020 0.0968019289 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
11 Hb_002411_200 0.0975116638 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000567_260 0.0988395835 - - BnaA09g41440D [Brassica napus]
13 Hb_021254_030 0.0995541245 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_000754_060 0.1015098412 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
15 Hb_000457_150 0.1037826655 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
16 Hb_055062_030 0.1047685456 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
17 Hb_002909_070 0.1068305521 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
18 Hb_007380_070 0.107023051 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
19 Hb_000554_020 0.1070780114 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
20 Hb_010381_070 0.1077446146 - - PREDICTED: protein STU1-like [Jatropha curcas]

Gene co-expression network

sample Hb_061802_020 Hb_061802_020 Hb_000030_150 Hb_000030_150 Hb_061802_020--Hb_000030_150 Hb_006949_040 Hb_006949_040 Hb_061802_020--Hb_006949_040 Hb_000049_120 Hb_000049_120 Hb_061802_020--Hb_000049_120 Hb_001195_690 Hb_001195_690 Hb_061802_020--Hb_001195_690 Hb_001671_020 Hb_001671_020 Hb_061802_020--Hb_001671_020 Hb_020178_070 Hb_020178_070 Hb_061802_020--Hb_020178_070 Hb_000030_150--Hb_006949_040 Hb_002909_070 Hb_002909_070 Hb_000030_150--Hb_002909_070 Hb_003787_020 Hb_003787_020 Hb_000030_150--Hb_003787_020 Hb_000920_240 Hb_000920_240 Hb_000030_150--Hb_000920_240 Hb_002890_280 Hb_002890_280 Hb_000030_150--Hb_002890_280 Hb_006949_050 Hb_006949_050 Hb_006949_040--Hb_006949_050 Hb_000193_290 Hb_000193_290 Hb_006949_040--Hb_000193_290 Hb_000554_020 Hb_000554_020 Hb_006949_040--Hb_000554_020 Hb_006949_040--Hb_001671_020 Hb_004724_420 Hb_004724_420 Hb_000049_120--Hb_004724_420 Hb_000840_210 Hb_000840_210 Hb_000049_120--Hb_000840_210 Hb_001248_130 Hb_001248_130 Hb_000049_120--Hb_001248_130 Hb_000754_040 Hb_000754_040 Hb_000049_120--Hb_000754_040 Hb_093084_050 Hb_093084_050 Hb_000049_120--Hb_093084_050 Hb_004324_310 Hb_004324_310 Hb_001195_690--Hb_004324_310 Hb_003052_100 Hb_003052_100 Hb_001195_690--Hb_003052_100 Hb_003994_180 Hb_003994_180 Hb_001195_690--Hb_003994_180 Hb_158092_070 Hb_158092_070 Hb_001195_690--Hb_158092_070 Hb_021254_030 Hb_021254_030 Hb_001195_690--Hb_021254_030 Hb_004657_020 Hb_004657_020 Hb_001195_690--Hb_004657_020 Hb_000567_260 Hb_000567_260 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_055062_030 Hb_055062_030 Hb_001671_020--Hb_055062_030 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_020178_070--Hb_001248_130 Hb_020178_070--Hb_000567_260 Hb_020178_070--Hb_001671_020 Hb_001881_020 Hb_001881_020 Hb_020178_070--Hb_001881_020 Hb_021650_030 Hb_021650_030 Hb_020178_070--Hb_021650_030 Hb_002411_200 Hb_002411_200 Hb_020178_070--Hb_002411_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
164.166 115.795 43.5759 68.8956 99.1322 173.641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
230.558 168.986 235.643 40.7934 30.5531

CAGE analysis