Hb_004324_370

Information

Type -
Description -
Location Contig4324: 231231-233721
Sequence    

Annotation

kegg
ID rcu:RCOM_1581390
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090138.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
swissprot
ID P0C899
description Putative pentatricopeptide repeat-containing protein At3g49142 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
trembl
ID B9RIP1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1581390 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at3g49142

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42349: 232801-233567 , PASA_asmbl_42351: 233664-234090
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_370 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
2 Hb_000193_290 0.0854129385 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
3 Hb_055062_030 0.0874480684 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
4 Hb_000457_150 0.0875385119 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
5 Hb_006949_050 0.0916587001 - - unknown [Lotus japonicus]
6 Hb_000554_020 0.0926451404 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
7 Hb_002399_010 0.0949605158 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001073_070 0.0950419589 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
9 Hb_004951_040 0.0953803503 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
10 Hb_006949_040 0.0957572607 - - protein phosphatase 2c, putative [Ricinus communis]
11 Hb_001863_390 0.0977742023 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
12 Hb_005357_030 0.0978566753 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
13 Hb_008453_090 0.0981156641 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
14 Hb_004128_060 0.0990307665 - - PREDICTED: DNA topoisomerase 6 subunit A [Jatropha curcas]
15 Hb_005532_060 0.099288014 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
16 Hb_004306_100 0.0993114903 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
17 Hb_000022_250 0.1057586174 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
18 Hb_003018_200 0.1065513078 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
19 Hb_000251_130 0.1080104243 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
20 Hb_007747_200 0.108287579 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g37570 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_370 Hb_004324_370 Hb_000193_290 Hb_000193_290 Hb_004324_370--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_004324_370--Hb_055062_030 Hb_000457_150 Hb_000457_150 Hb_004324_370--Hb_000457_150 Hb_006949_050 Hb_006949_050 Hb_004324_370--Hb_006949_050 Hb_000554_020 Hb_000554_020 Hb_004324_370--Hb_000554_020 Hb_002399_010 Hb_002399_010 Hb_004324_370--Hb_002399_010 Hb_008453_090 Hb_008453_090 Hb_000193_290--Hb_008453_090 Hb_006949_040 Hb_006949_040 Hb_000193_290--Hb_006949_040 Hb_000671_150 Hb_000671_150 Hb_000193_290--Hb_000671_150 Hb_000193_290--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_000193_290--Hb_003266_130 Hb_016065_010 Hb_016065_010 Hb_000193_290--Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_055062_030--Hb_008453_090 Hb_005532_060 Hb_005532_060 Hb_000457_150--Hb_005532_060 Hb_178968_110 Hb_178968_110 Hb_000457_150--Hb_178968_110 Hb_000297_200 Hb_000297_200 Hb_000457_150--Hb_000297_200 Hb_000457_150--Hb_055062_030 Hb_000997_400 Hb_000997_400 Hb_000457_150--Hb_000997_400 Hb_000457_150--Hb_000567_260 Hb_006949_050--Hb_006949_040 Hb_006949_050--Hb_000554_020 Hb_006949_050--Hb_000457_150 Hb_006949_050--Hb_001671_020 Hb_006949_050--Hb_000193_290 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_001913_010 Hb_001913_010 Hb_002399_010--Hb_001913_010 Hb_001073_070 Hb_001073_070 Hb_002399_010--Hb_001073_070 Hb_002399_010--Hb_000554_020 Hb_002375_020 Hb_002375_020 Hb_002399_010--Hb_002375_020 Hb_003025_090 Hb_003025_090 Hb_002399_010--Hb_003025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59133 3.45428 0.723407 0.753777 3.02431 3.69995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82056 6.42665 5.41131 1.69258 1.54296

CAGE analysis