Hb_002399_010

Information

Type -
Description -
Location Contig2399: 19062-19319
Sequence    

Annotation

kegg
ID rcu:RCOM_1312560
description hypothetical protein
nr
ID XP_002518873.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYQ4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1312560 PE=4 SV=1
Gene Ontology
ID GO:0005634
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002399_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001913_010 0.077976427 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
3 Hb_001073_070 0.0805189288 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
4 Hb_000554_020 0.0882233645 - - PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Jatropha curcas]
5 Hb_002375_020 0.0883454657 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
6 Hb_003025_090 0.0944702842 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
7 Hb_004324_370 0.0949605158 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
8 Hb_001252_110 0.09618334 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
9 Hb_002150_080 0.0982378108 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
10 Hb_002307_030 0.0982567353 - - 40S ribosomal protein S15D [Hevea brasiliensis]
11 Hb_135545_010 0.0988424377 - - calmodulin binding protein, putative [Ricinus communis]
12 Hb_008453_090 0.0993027392 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
13 Hb_005357_030 0.1007330838 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
14 Hb_012762_050 0.1007643735 - - PREDICTED: uncharacterized protein LOC105634060 [Jatropha curcas]
15 Hb_000193_290 0.1021928273 - - hypothetical protein JCGZ_11661 [Jatropha curcas]
16 Hb_000787_110 0.1035855471 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
17 Hb_001301_160 0.1036242926 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
18 Hb_003929_260 0.1043044484 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002301_140 0.1044326466 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
20 Hb_000224_170 0.10511995 - - hypothetical protein JCGZ_13777 [Jatropha curcas]

Gene co-expression network

sample Hb_002399_010 Hb_002399_010 Hb_001913_010 Hb_001913_010 Hb_002399_010--Hb_001913_010 Hb_001073_070 Hb_001073_070 Hb_002399_010--Hb_001073_070 Hb_000554_020 Hb_000554_020 Hb_002399_010--Hb_000554_020 Hb_002375_020 Hb_002375_020 Hb_002399_010--Hb_002375_020 Hb_003025_090 Hb_003025_090 Hb_002399_010--Hb_003025_090 Hb_004324_370 Hb_004324_370 Hb_002399_010--Hb_004324_370 Hb_001511_020 Hb_001511_020 Hb_001913_010--Hb_001511_020 Hb_001274_030 Hb_001274_030 Hb_001913_010--Hb_001274_030 Hb_004109_200 Hb_004109_200 Hb_001913_010--Hb_004109_200 Hb_010381_070 Hb_010381_070 Hb_001913_010--Hb_010381_070 Hb_000162_090 Hb_000162_090 Hb_001913_010--Hb_000162_090 Hb_005357_030 Hb_005357_030 Hb_001073_070--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_001073_070--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_001073_070--Hb_007590_050 Hb_002150_080 Hb_002150_080 Hb_001073_070--Hb_002150_080 Hb_011571_020 Hb_011571_020 Hb_001073_070--Hb_011571_020 Hb_000406_220 Hb_000406_220 Hb_000554_020--Hb_000406_220 Hb_006332_020 Hb_006332_020 Hb_000554_020--Hb_006332_020 Hb_000754_060 Hb_000754_060 Hb_000554_020--Hb_000754_060 Hb_001671_020 Hb_001671_020 Hb_000554_020--Hb_001671_020 Hb_028872_140 Hb_028872_140 Hb_000554_020--Hb_028872_140 Hb_000032_290 Hb_000032_290 Hb_000554_020--Hb_000032_290 Hb_002375_020--Hb_010381_070 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002027_260 Hb_002027_260 Hb_002375_020--Hb_002027_260 Hb_002375_020--Hb_004109_200 Hb_002375_020--Hb_006332_020 Hb_003025_090--Hb_001913_010 Hb_178968_110 Hb_178968_110 Hb_003025_090--Hb_178968_110 Hb_000179_210 Hb_000179_210 Hb_003025_090--Hb_000179_210 Hb_003929_260 Hb_003929_260 Hb_003025_090--Hb_003929_260 Hb_003297_030 Hb_003297_030 Hb_003025_090--Hb_003297_030 Hb_000193_290 Hb_000193_290 Hb_004324_370--Hb_000193_290 Hb_055062_030 Hb_055062_030 Hb_004324_370--Hb_055062_030 Hb_000457_150 Hb_000457_150 Hb_004324_370--Hb_000457_150 Hb_006949_050 Hb_006949_050 Hb_004324_370--Hb_006949_050 Hb_004324_370--Hb_000554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
303.389 235.24 76.9515 85.1031 235.271 281.21
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
254.402 438.533 337.914 77.7467 53.3698

CAGE analysis