Hb_007590_050

Information

Type -
Description -
Location Contig7590: 32201-34883
Sequence    

Annotation

kegg
ID rcu:RCOM_0612440
description NudC domain-containing protein, putative
nr
ID XP_002525640.1
description NudC domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9CQ48
description NudC domain-containing protein 2 OS=Mus musculus GN=Nudcd2 PE=1 SV=1
trembl
ID B9SI21
description NudC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0612440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57168: 32331-34863 , PASA_asmbl_57169: 33657-33889
cDNA
(Sanger)
(ID:Location)		 014_M04.ab1: 32331-34696 , 041_D22.ab1: 32331-34696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007590_050 0.0 - - NudC domain-containing protein, putative [Ricinus communis]
2 Hb_005357_030 0.0592996474 - - PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic [Jatropha curcas]
3 Hb_002685_170 0.064603306 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
4 Hb_000109_160 0.0666604352 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
5 Hb_000656_400 0.0686300687 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
6 Hb_020956_020 0.0707717007 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
7 Hb_003126_080 0.0735872426 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
8 Hb_028995_040 0.0754393469 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
9 Hb_001159_140 0.0755848954 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
10 Hb_000510_130 0.075964518 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
11 Hb_000661_250 0.0762321874 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
12 Hb_001226_160 0.0779385891 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
13 Hb_004223_280 0.0779521537 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
14 Hb_001552_020 0.0808699587 - - PREDICTED: uncharacterized protein LOC105639653 [Jatropha curcas]
15 Hb_096563_010 0.082070783 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
16 Hb_004491_010 0.0831072624 - - 60S ribosomal protein L51, putative [Ricinus communis]
17 Hb_001259_090 0.0837569697 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
18 Hb_005694_110 0.0842116553 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
19 Hb_002868_010 0.0845739297 - - 60S ribosomal protein L30, putative [Ricinus communis]
20 Hb_001143_130 0.0855208795 - - peroxidase 2 [Hevea brasiliensis]

Gene co-expression network

sample Hb_007590_050 Hb_007590_050 Hb_005357_030 Hb_005357_030 Hb_007590_050--Hb_005357_030 Hb_002685_170 Hb_002685_170 Hb_007590_050--Hb_002685_170 Hb_000109_160 Hb_000109_160 Hb_007590_050--Hb_000109_160 Hb_000656_400 Hb_000656_400 Hb_007590_050--Hb_000656_400 Hb_020956_020 Hb_020956_020 Hb_007590_050--Hb_020956_020 Hb_003126_080 Hb_003126_080 Hb_007590_050--Hb_003126_080 Hb_004223_280 Hb_004223_280 Hb_005357_030--Hb_004223_280 Hb_005357_030--Hb_002685_170 Hb_001138_050 Hb_001138_050 Hb_005357_030--Hb_001138_050 Hb_019253_020 Hb_019253_020 Hb_005357_030--Hb_019253_020 Hb_001226_160 Hb_001226_160 Hb_005357_030--Hb_001226_160 Hb_004491_010 Hb_004491_010 Hb_002685_170--Hb_004491_010 Hb_002685_170--Hb_004223_280 Hb_028995_040 Hb_028995_040 Hb_002685_170--Hb_028995_040 Hb_002685_170--Hb_003126_080 Hb_005928_110 Hb_005928_110 Hb_000109_160--Hb_005928_110 Hb_000109_160--Hb_005357_030 Hb_000109_160--Hb_002685_170 Hb_000109_160--Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_000109_160--Hb_000510_130 Hb_000656_400--Hb_003126_080 Hb_000920_180 Hb_000920_180 Hb_000656_400--Hb_000920_180 Hb_000656_400--Hb_001226_160 Hb_118707_030 Hb_118707_030 Hb_000656_400--Hb_118707_030 Hb_001259_090 Hb_001259_090 Hb_000656_400--Hb_001259_090 Hb_001766_110 Hb_001766_110 Hb_000656_400--Hb_001766_110 Hb_020956_020--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_020956_020--Hb_001226_160 Hb_005305_080 Hb_005305_080 Hb_020956_020--Hb_005305_080 Hb_005993_040 Hb_005993_040 Hb_003126_080--Hb_005993_040 Hb_172632_090 Hb_172632_090 Hb_003126_080--Hb_172632_090 Hb_000205_160 Hb_000205_160 Hb_003126_080--Hb_000205_160 Hb_003126_080--Hb_004491_010 Hb_003126_080--Hb_004223_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
218.102 226.028 104.438 118.18 231.115 254.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
313.941 395.754 195.447 126.257 74.853

CAGE analysis