Hb_003929_260

Information

Type -
Description -
Location Contig3929: 173067-175984
Sequence    

Annotation

kegg
ID rcu:RCOM_1002930
description hypothetical protein
nr
ID XP_002519303.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID C0LU16
description Mediator of RNA polymerase II transcription subunit 21 OS=Arabidopsis thaliana GN=MED21 PE=1 SV=1
trembl
ID B9RZY4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1002930 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39385: 173136-176045 , PASA_asmbl_39386: 173136-176050 , PASA_asmbl_39387: 173136-176050
cDNA
(Sanger)
(ID:Location)		 011_J20.ab1: 173175-176050 , 027_C12.ab1: 173209-176050

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003929_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002150_080 0.0905373393 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
3 Hb_003025_090 0.0963943265 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_002399_010 0.1043044484 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007575_060 0.1052437582 - - hypothetical protein CARUB_v10002094mg, partial [Capsella rubella]
6 Hb_000042_030 0.1135301467 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
7 Hb_001073_070 0.1225499797 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
8 Hb_002085_110 0.1226748032 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
9 Hb_000139_350 0.1228718856 - - AtGCP3 interacting protein 1 [Theobroma cacao]
10 Hb_000056_340 0.1255860569 - - 60S ribosomal protein L34A [Hevea brasiliensis]
11 Hb_126643_020 0.126525607 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1 [Jatropha curcas]
12 Hb_000640_080 0.1280485272 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
13 Hb_135545_010 0.1296059955 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_001913_010 0.1300820541 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
15 Hb_000567_210 0.1303974161 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
16 Hb_000123_120 0.1311358324 - - actin depolymerizing factor 4 [Hevea brasiliensis]
17 Hb_001623_420 0.1312227045 - - nucleotide binding protein, putative [Ricinus communis]
18 Hb_000139_410 0.1321117872 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
19 Hb_010381_070 0.1321362895 - - PREDICTED: protein STU1-like [Jatropha curcas]
20 Hb_005883_030 0.1343450309 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]

Gene co-expression network

sample Hb_003929_260 Hb_003929_260 Hb_002150_080 Hb_002150_080 Hb_003929_260--Hb_002150_080 Hb_003025_090 Hb_003025_090 Hb_003929_260--Hb_003025_090 Hb_002399_010 Hb_002399_010 Hb_003929_260--Hb_002399_010 Hb_007575_060 Hb_007575_060 Hb_003929_260--Hb_007575_060 Hb_000042_030 Hb_000042_030 Hb_003929_260--Hb_000042_030 Hb_001073_070 Hb_001073_070 Hb_003929_260--Hb_001073_070 Hb_000139_410 Hb_000139_410 Hb_002150_080--Hb_000139_410 Hb_000621_080 Hb_000621_080 Hb_002150_080--Hb_000621_080 Hb_002495_070 Hb_002495_070 Hb_002150_080--Hb_002495_070 Hb_010381_070 Hb_010381_070 Hb_002150_080--Hb_010381_070 Hb_002085_110 Hb_002085_110 Hb_002150_080--Hb_002085_110 Hb_002685_170 Hb_002685_170 Hb_002150_080--Hb_002685_170 Hb_001913_010 Hb_001913_010 Hb_003025_090--Hb_001913_010 Hb_003025_090--Hb_002399_010 Hb_178968_110 Hb_178968_110 Hb_003025_090--Hb_178968_110 Hb_000179_210 Hb_000179_210 Hb_003025_090--Hb_000179_210 Hb_003297_030 Hb_003297_030 Hb_003025_090--Hb_003297_030 Hb_002399_010--Hb_001913_010 Hb_002399_010--Hb_001073_070 Hb_000554_020 Hb_000554_020 Hb_002399_010--Hb_000554_020 Hb_002375_020 Hb_002375_020 Hb_002399_010--Hb_002375_020 Hb_004324_370 Hb_004324_370 Hb_002399_010--Hb_004324_370 Hb_000139_350 Hb_000139_350 Hb_007575_060--Hb_000139_350 Hb_135545_010 Hb_135545_010 Hb_007575_060--Hb_135545_010 Hb_007575_060--Hb_002150_080 Hb_007426_180 Hb_007426_180 Hb_007575_060--Hb_007426_180 Hb_017469_020 Hb_017469_020 Hb_007575_060--Hb_017469_020 Hb_000261_490 Hb_000261_490 Hb_000042_030--Hb_000261_490 Hb_000042_030--Hb_002399_010 Hb_004109_200 Hb_004109_200 Hb_000042_030--Hb_004109_200 Hb_061802_020 Hb_061802_020 Hb_000042_030--Hb_061802_020 Hb_000042_030--Hb_001913_010 Hb_005357_030 Hb_005357_030 Hb_001073_070--Hb_005357_030 Hb_001073_070--Hb_002685_170 Hb_007590_050 Hb_007590_050 Hb_001073_070--Hb_007590_050 Hb_001073_070--Hb_002150_080 Hb_011571_020 Hb_011571_020 Hb_001073_070--Hb_011571_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
161.841 120.224 53.6656 17.9822 119.829 77.9119
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
120.539 164.197 158.706 31.5836 16.3652

CAGE analysis