Hb_000261_490

Information

Type -
Description -
Location Contig261: 469502-473293
Sequence    

Annotation

kegg
ID tcc:TCM_020342
description Cyclin dependent kinase inhibitor, putative
nr
ID XP_012071158.1
description PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
swissprot
ID Q8GYJ3
description Cyclin-dependent kinase inhibitor 4 OS=Arabidopsis thaliana GN=KRP4 PE=1 SV=2
trembl
ID A0A067L5J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01136 PE=4 SV=1
Gene Ontology
ID GO:0005634
description cyclin-dependent kinase inhibitor 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27321: 469516-473090 , PASA_asmbl_27322: 470880-471126 , PASA_asmbl_27323: 472391-472517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_490 0.0 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
2 Hb_000042_030 0.1041008401 transcription factor TF Family: NAC NAC domain protein, IPR003441 [Theobroma cacao]
3 Hb_000078_180 0.1262775295 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
4 Hb_001318_030 0.1319643262 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
5 Hb_000457_170 0.1348344017 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
6 Hb_003929_260 0.1349457902 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005843_100 0.1367216308 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
8 Hb_005396_050 0.1383152072 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
9 Hb_000567_210 0.1413194225 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
10 Hb_006582_020 0.1441078725 - - Zinc finger protein ZFPM1 [Theobroma cacao]
11 Hb_001060_110 0.1451522632 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
12 Hb_004607_150 0.1461604676 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
13 Hb_002150_080 0.148019742 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_000175_450 0.1502127332 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
15 Hb_004324_340 0.1508538559 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000237_080 0.1532208064 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
17 Hb_000500_040 0.1572909246 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001610_110 0.1574902266 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
19 Hb_002813_050 0.1577808004 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
20 Hb_169325_010 0.1579337436 - - PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]

Gene co-expression network

sample Hb_000261_490 Hb_000261_490 Hb_000042_030 Hb_000042_030 Hb_000261_490--Hb_000042_030 Hb_000078_180 Hb_000078_180 Hb_000261_490--Hb_000078_180 Hb_001318_030 Hb_001318_030 Hb_000261_490--Hb_001318_030 Hb_000457_170 Hb_000457_170 Hb_000261_490--Hb_000457_170 Hb_003929_260 Hb_003929_260 Hb_000261_490--Hb_003929_260 Hb_005843_100 Hb_005843_100 Hb_000261_490--Hb_005843_100 Hb_002399_010 Hb_002399_010 Hb_000042_030--Hb_002399_010 Hb_000042_030--Hb_003929_260 Hb_004109_200 Hb_004109_200 Hb_000042_030--Hb_004109_200 Hb_061802_020 Hb_061802_020 Hb_000042_030--Hb_061802_020 Hb_001913_010 Hb_001913_010 Hb_000042_030--Hb_001913_010 Hb_000078_180--Hb_004109_200 Hb_000175_450 Hb_000175_450 Hb_000078_180--Hb_000175_450 Hb_000483_350 Hb_000483_350 Hb_000078_180--Hb_000483_350 Hb_000798_060 Hb_000798_060 Hb_000078_180--Hb_000798_060 Hb_000085_270 Hb_000085_270 Hb_000078_180--Hb_000085_270 Hb_001288_080 Hb_001288_080 Hb_000078_180--Hb_001288_080 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_012807_050 Hb_012807_050 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_000457_170--Hb_005843_100 Hb_026698_010 Hb_026698_010 Hb_000457_170--Hb_026698_010 Hb_005396_050 Hb_005396_050 Hb_000457_170--Hb_005396_050 Hb_146464_010 Hb_146464_010 Hb_000457_170--Hb_146464_010 Hb_000497_180 Hb_000497_180 Hb_000457_170--Hb_000497_180 Hb_002150_080 Hb_002150_080 Hb_003929_260--Hb_002150_080 Hb_003025_090 Hb_003025_090 Hb_003929_260--Hb_003025_090 Hb_003929_260--Hb_002399_010 Hb_007575_060 Hb_007575_060 Hb_003929_260--Hb_007575_060 Hb_001073_070 Hb_001073_070 Hb_003929_260--Hb_001073_070 Hb_002813_050 Hb_002813_050 Hb_005843_100--Hb_002813_050 Hb_005843_100--Hb_001318_030 Hb_096224_040 Hb_096224_040 Hb_005843_100--Hb_096224_040 Hb_005843_150 Hb_005843_150 Hb_005843_100--Hb_005843_150 Hb_012395_220 Hb_012395_220 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
101.566 92.4762 14.0069 7.53249 32.6202 50.272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.2701 64.6029 70.1597 18.0429 6.42197

CAGE analysis