Hb_005843_150

Information

Type transcription factor
Description TF Family: HSF
Location Contig5843: 117001-119589
Sequence    

Annotation

kegg
ID tcc:TCM_000610
description Heat shock factor 4
nr
ID XP_012079229.1
description PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
swissprot
ID P22335
description Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1
trembl
ID A0A067KI29
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12391 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat shock factor protein hsf24

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49950: 116986-119519 , PASA_asmbl_49951: 117954-118151
cDNA
(Sanger)
(ID:Location)		 019_J23.ab1: 118867-119519 , 020_E18.ab1: 116990-117270 , 021_E17.ab1: 116991-117513 , 025_G24.ab1: 117689-119424 , 025_I03.ab1: 117760-119428

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005843_150 0.0 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
2 Hb_000497_180 0.0949788676 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
3 Hb_005843_100 0.1139016099 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
4 Hb_096224_040 0.1216563132 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
5 Hb_000237_080 0.1302517339 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
6 Hb_002813_050 0.1434564792 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
7 Hb_001318_030 0.144895827 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
8 Hb_006582_020 0.1495277869 - - Zinc finger protein ZFPM1 [Theobroma cacao]
9 Hb_027506_020 0.1526537533 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
10 Hb_002435_110 0.1562605907 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
11 Hb_001195_680 0.1573999777 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 [Jatropha curcas]
12 Hb_000976_150 0.1577035663 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
13 Hb_003376_350 0.1581276058 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
14 Hb_005551_050 0.1582052677 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
15 Hb_005015_070 0.1616242012 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
16 Hb_005147_090 0.1619777332 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
17 Hb_004807_030 0.1623574138 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
18 Hb_000016_100 0.163779806 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
19 Hb_000926_330 0.1638034763 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
20 Hb_004032_270 0.1671395092 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_005843_150 Hb_005843_150 Hb_000497_180 Hb_000497_180 Hb_005843_150--Hb_000497_180 Hb_005843_100 Hb_005843_100 Hb_005843_150--Hb_005843_100 Hb_096224_040 Hb_096224_040 Hb_005843_150--Hb_096224_040 Hb_000237_080 Hb_000237_080 Hb_005843_150--Hb_000237_080 Hb_002813_050 Hb_002813_050 Hb_005843_150--Hb_002813_050 Hb_001318_030 Hb_001318_030 Hb_005843_150--Hb_001318_030 Hb_000497_180--Hb_000237_080 Hb_000497_180--Hb_002813_050 Hb_000497_180--Hb_005843_100 Hb_000703_240 Hb_000703_240 Hb_000497_180--Hb_000703_240 Hb_000497_180--Hb_096224_040 Hb_005843_100--Hb_002813_050 Hb_005843_100--Hb_001318_030 Hb_005843_100--Hb_096224_040 Hb_012395_220 Hb_012395_220 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310 Hb_027506_020 Hb_027506_020 Hb_096224_040--Hb_027506_020 Hb_001141_390 Hb_001141_390 Hb_096224_040--Hb_001141_390 Hb_096224_040--Hb_002813_050 Hb_000665_010 Hb_000665_010 Hb_096224_040--Hb_000665_010 Hb_000237_080--Hb_001318_030 Hb_004785_060 Hb_004785_060 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000859_060 Hb_000859_060 Hb_000237_080--Hb_000859_060 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_002813_050--Hb_000859_060 Hb_002813_050--Hb_004785_060 Hb_002813_050--Hb_012395_220 Hb_002813_050--Hb_001141_390 Hb_012807_050 Hb_012807_050 Hb_002813_050--Hb_012807_050 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
284.723 772.602 37.1318 98.3546 472.051 260.611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
443.05 572.92 593.954 200.533 57.7966

CAGE analysis