Hb_096224_040

Information

Type -
Description -
Location Contig96224: 26062-27670
Sequence    

Annotation

kegg
ID pop:POPTR_0006s29370g
description hypothetical protein
nr
ID XP_012076283.1
description PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
swissprot
ID Q8VZQ0
description Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1
trembl
ID A0A067KB13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06982 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable nucleoredoxin 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63804: 26233-27735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096224_040 0.0 - - PREDICTED: probable nucleoredoxin 3 isoform X1 [Jatropha curcas]
2 Hb_005843_100 0.1106595992 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
3 Hb_027506_020 0.1155548883 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
4 Hb_005843_150 0.1216563132 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
5 Hb_001141_390 0.1331974979 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
6 Hb_002813_050 0.1388807545 desease resistance Gene Name: TIR_2 PREDICTED: uncharacterized protein LOC105635699 [Jatropha curcas]
7 Hb_000665_010 0.1402789243 - - hypothetical protein 20 [Hevea brasiliensis]
8 Hb_002374_310 0.144303632 - - PREDICTED: uncharacterized protein LOC105638955 [Jatropha curcas]
9 Hb_003106_040 0.1465961205 - - lipase, putative [Ricinus communis]
10 Hb_005551_060 0.1476052356 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
11 Hb_000009_580 0.1491242373 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
12 Hb_005015_070 0.1526905375 - - PREDICTED: pentatricopeptide repeat-containing protein At4g39530 [Jatropha curcas]
13 Hb_004807_030 0.153381671 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
14 Hb_000497_180 0.1535531331 - - hypothetical protein POPTR_0001s12710g [Populus trichocarpa]
15 Hb_000680_050 0.1548444069 - - hypothetical protein JCGZ_24767 [Jatropha curcas]
16 Hb_000025_520 0.159695685 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27110 [Jatropha curcas]
17 Hb_000574_410 0.1632793085 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
18 Hb_012807_050 0.1634975204 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
19 Hb_000928_300 0.1639911544 - - PREDICTED: pentatricopeptide repeat-containing protein At3g03580 [Jatropha curcas]
20 Hb_001318_030 0.1645687349 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]

Gene co-expression network

sample Hb_096224_040 Hb_096224_040 Hb_005843_100 Hb_005843_100 Hb_096224_040--Hb_005843_100 Hb_027506_020 Hb_027506_020 Hb_096224_040--Hb_027506_020 Hb_005843_150 Hb_005843_150 Hb_096224_040--Hb_005843_150 Hb_001141_390 Hb_001141_390 Hb_096224_040--Hb_001141_390 Hb_002813_050 Hb_002813_050 Hb_096224_040--Hb_002813_050 Hb_000665_010 Hb_000665_010 Hb_096224_040--Hb_000665_010 Hb_005843_100--Hb_002813_050 Hb_001318_030 Hb_001318_030 Hb_005843_100--Hb_001318_030 Hb_005843_100--Hb_005843_150 Hb_012395_220 Hb_012395_220 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310 Hb_001828_130 Hb_001828_130 Hb_027506_020--Hb_001828_130 Hb_003752_100 Hb_003752_100 Hb_027506_020--Hb_003752_100 Hb_000140_070 Hb_000140_070 Hb_027506_020--Hb_000140_070 Hb_076693_020 Hb_076693_020 Hb_027506_020--Hb_076693_020 Hb_004785_060 Hb_004785_060 Hb_027506_020--Hb_004785_060 Hb_012807_050 Hb_012807_050 Hb_027506_020--Hb_012807_050 Hb_000497_180 Hb_000497_180 Hb_005843_150--Hb_000497_180 Hb_000237_080 Hb_000237_080 Hb_005843_150--Hb_000237_080 Hb_005843_150--Hb_002813_050 Hb_005843_150--Hb_001318_030 Hb_000204_210 Hb_000204_210 Hb_001141_390--Hb_000204_210 Hb_000680_050 Hb_000680_050 Hb_001141_390--Hb_000680_050 Hb_001141_390--Hb_002374_310 Hb_048219_010 Hb_048219_010 Hb_001141_390--Hb_048219_010 Hb_005015_070 Hb_005015_070 Hb_001141_390--Hb_005015_070 Hb_001584_150 Hb_001584_150 Hb_001141_390--Hb_001584_150 Hb_000000_370 Hb_000000_370 Hb_002813_050--Hb_000000_370 Hb_000859_060 Hb_000859_060 Hb_002813_050--Hb_000859_060 Hb_002813_050--Hb_004785_060 Hb_002813_050--Hb_012395_220 Hb_002813_050--Hb_001141_390 Hb_002813_050--Hb_012807_050 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000525_010 Hb_000525_010 Hb_000665_010--Hb_000525_010 Hb_001950_030 Hb_001950_030 Hb_000665_010--Hb_001950_030 Hb_000665_010--Hb_000140_070 Hb_000009_580 Hb_000009_580 Hb_000665_010--Hb_000009_580
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.1505 101.031 6.64985 20.0182 54.0752 35.3675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.2535 42.2773 75.1034 12.7844 10.4165

CAGE analysis