Hb_001950_030

Information

Type -
Description -
Location Contig1950: 16857-18440
Sequence    

Annotation

kegg
ID rcu:RCOM_1153060
description skip-2, putative
nr
ID XP_012079304.1
description PREDICTED: F-box protein SKIP2 [Jatropha curcas]
swissprot
ID Q9FE83
description F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1
trembl
ID A0A067KI89
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12451 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001950_030 0.0 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]
2 Hb_000525_010 0.1358529645 - - ring finger protein, putative [Ricinus communis]
3 Hb_004597_010 0.137343777 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
4 Hb_155396_010 0.1386259007 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_000665_010 0.1402100618 - - hypothetical protein 20 [Hevea brasiliensis]
6 Hb_001247_120 0.1434774572 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
7 Hb_000540_120 0.1460033312 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
8 Hb_000069_230 0.1474609285 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
9 Hb_000025_330 0.1507640391 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
10 Hb_003125_030 0.1523055248 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
11 Hb_000140_070 0.1552195587 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
12 Hb_005551_060 0.1555236995 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
13 Hb_012226_010 0.1579260992 - - PREDICTED: protein DGCR14 [Jatropha curcas]
14 Hb_002739_150 0.1629221456 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
15 Hb_001638_040 0.1685391146 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
16 Hb_003752_100 0.1693848679 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
17 Hb_001189_130 0.1699172685 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
18 Hb_001860_020 0.1711656685 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
19 Hb_002071_050 0.1712330194 - - PREDICTED: mitogen-activated protein kinase kinase 5-like [Jatropha curcas]
20 Hb_003517_060 0.1717254796 - - hypothetical protein CISIN_1g044999mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001950_030 Hb_001950_030 Hb_000525_010 Hb_000525_010 Hb_001950_030--Hb_000525_010 Hb_004597_010 Hb_004597_010 Hb_001950_030--Hb_004597_010 Hb_155396_010 Hb_155396_010 Hb_001950_030--Hb_155396_010 Hb_000665_010 Hb_000665_010 Hb_001950_030--Hb_000665_010 Hb_001247_120 Hb_001247_120 Hb_001950_030--Hb_001247_120 Hb_000540_120 Hb_000540_120 Hb_001950_030--Hb_000540_120 Hb_007850_090 Hb_007850_090 Hb_000525_010--Hb_007850_090 Hb_000025_330 Hb_000025_330 Hb_000525_010--Hb_000025_330 Hb_001691_150 Hb_001691_150 Hb_000525_010--Hb_001691_150 Hb_000418_070 Hb_000418_070 Hb_000525_010--Hb_000418_070 Hb_003430_060 Hb_003430_060 Hb_000525_010--Hb_003430_060 Hb_000574_100 Hb_000574_100 Hb_000525_010--Hb_000574_100 Hb_004597_010--Hb_155396_010 Hb_009771_100 Hb_009771_100 Hb_004597_010--Hb_009771_100 Hb_003411_110 Hb_003411_110 Hb_004597_010--Hb_003411_110 Hb_004597_010--Hb_000025_330 Hb_000084_030 Hb_000084_030 Hb_004597_010--Hb_000084_030 Hb_005541_010 Hb_005541_010 Hb_004597_010--Hb_005541_010 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_005551_060 Hb_005551_060 Hb_000665_010--Hb_005551_060 Hb_000665_010--Hb_000525_010 Hb_096224_040 Hb_096224_040 Hb_000665_010--Hb_096224_040 Hb_000140_070 Hb_000140_070 Hb_000665_010--Hb_000140_070 Hb_000009_580 Hb_000009_580 Hb_000665_010--Hb_000009_580 Hb_001247_120--Hb_005551_060 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001348_150 Hb_001348_150 Hb_001247_120--Hb_001348_150 Hb_001247_120--Hb_001864_060 Hb_001247_120--Hb_000025_330 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.5359 71.7022 7.59283 28.8823 25.9194 21.9592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1407 12.3716 21.9002 6.96011 3.82312

CAGE analysis