Hb_011465_030

Information

Type -
Description -
Location Contig11465: 46215-48509
Sequence    

Annotation

kegg
ID rcu:RCOM_1677160
description B2 protein, putative
nr
ID XP_012070379.1
description PREDICTED: B2 protein [Jatropha curcas]
swissprot
ID P37707
description B2 protein OS=Daucus carota PE=2 SV=1
trembl
ID A0A067LCT9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10121 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04430: 44871-48393 , PASA_asmbl_04431: 44888-48413 , PASA_asmbl_04432: 44906-48393 , PASA_asmbl_04433: 45267-45830
cDNA
(Sanger)
(ID:Location)		 019_L01.ab1: 44871-47232

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011465_030 0.0 - - PREDICTED: B2 protein [Jatropha curcas]
2 Hb_002477_150 0.0647924731 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
3 Hb_000265_250 0.0743271987 - - auxilin, putative [Ricinus communis]
4 Hb_007403_050 0.0827894181 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
5 Hb_001946_300 0.0861928452 - - PREDICTED: F-box protein At-B [Jatropha curcas]
6 Hb_002849_080 0.0889147897 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
7 Hb_000540_120 0.090893144 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
8 Hb_009028_030 0.0933825527 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
9 Hb_148209_020 0.0937021186 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
10 Hb_006316_070 0.0941820613 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
11 Hb_000363_130 0.0949400432 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
12 Hb_032202_240 0.09561891 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
13 Hb_017075_030 0.0963653281 - - helicase, putative [Ricinus communis]
14 Hb_005946_170 0.0977809135 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_000813_100 0.0980762041 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
16 Hb_155702_010 0.0984342518 - - Tetraspanin-5 [Gossypium arboreum]
17 Hb_004032_180 0.0998556278 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
18 Hb_001059_100 0.1054272176 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
19 Hb_004899_070 0.1054554691 - - PREDICTED: RRP12-like protein [Jatropha curcas]
20 Hb_002349_050 0.1074995703 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]

Gene co-expression network

sample Hb_011465_030 Hb_011465_030 Hb_002477_150 Hb_002477_150 Hb_011465_030--Hb_002477_150 Hb_000265_250 Hb_000265_250 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_002477_150--Hb_001946_300 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_000265_250--Hb_002849_080 Hb_000034_160 Hb_000034_160 Hb_007403_050--Hb_000034_160 Hb_007403_050--Hb_001946_300 Hb_000363_130 Hb_000363_130 Hb_007403_050--Hb_000363_130 Hb_004032_180 Hb_004032_180 Hb_007403_050--Hb_004032_180 Hb_000283_130 Hb_000283_130 Hb_007403_050--Hb_000283_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_000504_160 Hb_000504_160 Hb_001946_300--Hb_000504_160 Hb_002849_080--Hb_148209_020 Hb_006316_070 Hb_006316_070 Hb_002849_080--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
886.126 1282.88 257.229 286.803 818.025 906.026
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
387.328 202.061 237.845 273.429 194.711

CAGE analysis