Hb_002477_150

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig2477: 112769-115959
Sequence    

Annotation

kegg
ID rcu:RCOM_0706540
description DNA binding protein, putative
nr
ID XP_002516111.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q9M2B4
description PHD finger protein ALFIN-LIKE 3 OS=Arabidopsis thaliana GN=AL3 PE=1 SV=1
trembl
ID B9RQU2
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_0706540 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25793: 112728-116108
cDNA
(Sanger)
(ID:Location)		 043_A24.ab1: 112728-115571

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002477_150 0.0 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
2 Hb_011465_030 0.0647924731 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_148209_020 0.0775039034 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
4 Hb_005946_170 0.082484556 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
5 Hb_000265_250 0.083031228 - - auxilin, putative [Ricinus communis]
6 Hb_002659_060 0.0835164999 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
7 Hb_001946_300 0.0856017443 - - PREDICTED: F-box protein At-B [Jatropha curcas]
8 Hb_006316_070 0.0878884129 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
9 Hb_000363_130 0.0893919291 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
10 Hb_002813_010 0.0900923514 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
11 Hb_017075_030 0.0906144191 - - helicase, putative [Ricinus communis]
12 Hb_000813_100 0.0910067623 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
13 Hb_000098_130 0.0927248813 - - PREDICTED: serine/threonine-protein kinase SRK2A [Jatropha curcas]
14 Hb_004899_070 0.0927854051 - - PREDICTED: RRP12-like protein [Jatropha curcas]
15 Hb_000594_020 0.0944375496 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
16 Hb_032202_240 0.0944416848 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
17 Hb_001059_100 0.096239129 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
18 Hb_003206_030 0.0979732912 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
19 Hb_002849_080 0.0988253996 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
20 Hb_000120_610 0.0993173751 - - mitotic control protein dis3, putative [Ricinus communis]

Gene co-expression network

sample Hb_002477_150 Hb_002477_150 Hb_011465_030 Hb_011465_030 Hb_002477_150--Hb_011465_030 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_148209_020--Hb_002849_080 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_006316_070 Hb_006316_070 Hb_148209_020--Hb_006316_070 Hb_002977_010 Hb_002977_010 Hb_148209_020--Hb_002977_010 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_002813_010 Hb_002813_010 Hb_005946_170--Hb_002813_010 Hb_001059_100 Hb_001059_100 Hb_005946_170--Hb_001059_100 Hb_005946_170--Hb_148209_020 Hb_000813_100 Hb_000813_100 Hb_005946_170--Hb_000813_100 Hb_004543_030 Hb_004543_030 Hb_005946_170--Hb_004543_030 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_000265_250--Hb_002849_080 Hb_000120_610 Hb_000120_610 Hb_002659_060--Hb_000120_610 Hb_000594_020 Hb_000594_020 Hb_002659_060--Hb_000594_020 Hb_000504_160 Hb_000504_160 Hb_002659_060--Hb_000504_160 Hb_004920_130 Hb_004920_130 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_000363_130 Hb_000363_130 Hb_001946_300--Hb_000363_130 Hb_000313_340 Hb_000313_340 Hb_001946_300--Hb_000313_340 Hb_140049_020 Hb_140049_020 Hb_001946_300--Hb_140049_020 Hb_147737_010 Hb_147737_010 Hb_001946_300--Hb_147737_010 Hb_032202_240 Hb_032202_240 Hb_001946_300--Hb_032202_240 Hb_001946_300--Hb_000504_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
152.737 212.159 51.389 31.8774 165.858 173.129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.3636 47.2758 37.9137 62.8847 42.9315

CAGE analysis