Hb_006316_070

Information

Type transcription factor
Description TF Family: GeBP
Location Contig6316: 105874-109834
Sequence    

Annotation

kegg
ID rcu:RCOM_0906550
description transcription regulator, putative
nr
ID XP_012077335.1
description PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
swissprot
ID Q9SB42
description Mediator-associated protein 1 OS=Arabidopsis thaliana GN=At4g25210 PE=1 SV=1
trembl
ID A0A067LAY0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17238 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51853: 105883-109052 , PASA_asmbl_51854: 105883-109052 , PASA_asmbl_51855: 105883-107535
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006316_070 0.0 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
2 Hb_002849_080 0.0708695305 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
3 Hb_002977_010 0.0744066041 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
4 Hb_148209_020 0.0747756565 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
5 Hb_002813_010 0.08767412 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
6 Hb_002477_150 0.0878884129 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
7 Hb_001584_170 0.0901109275 - - neutral/alkaline invertase [Manihot esculenta]
8 Hb_011465_030 0.0941820613 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_012395_160 0.0948903208 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
10 Hb_000865_080 0.0975702047 - - arsenite-resistance protein, putative [Ricinus communis]
11 Hb_002609_010 0.0984276489 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_003878_140 0.0984651106 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
13 Hb_032202_240 0.0987552885 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
14 Hb_005946_170 0.1025298379 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_001946_300 0.1030090643 - - PREDICTED: F-box protein At-B [Jatropha curcas]
16 Hb_005399_020 0.1061795753 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
17 Hb_000363_130 0.1088680218 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
18 Hb_001157_180 0.1090450271 - - protein binding protein, putative [Ricinus communis]
19 Hb_003206_030 0.1111827515 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
20 Hb_000224_060 0.1116060377 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]

Gene co-expression network

sample Hb_006316_070 Hb_006316_070 Hb_002849_080 Hb_002849_080 Hb_006316_070--Hb_002849_080 Hb_002977_010 Hb_002977_010 Hb_006316_070--Hb_002977_010 Hb_148209_020 Hb_148209_020 Hb_006316_070--Hb_148209_020 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_002477_150 Hb_002477_150 Hb_006316_070--Hb_002477_150 Hb_001584_170 Hb_001584_170 Hb_006316_070--Hb_001584_170 Hb_002849_080--Hb_148209_020 Hb_002849_080--Hb_002977_010 Hb_002609_010 Hb_002609_010 Hb_002849_080--Hb_002609_010 Hb_011465_030 Hb_011465_030 Hb_002849_080--Hb_011465_030 Hb_005038_020 Hb_005038_020 Hb_002849_080--Hb_005038_020 Hb_003878_140 Hb_003878_140 Hb_002977_010--Hb_003878_140 Hb_032202_240 Hb_032202_240 Hb_002977_010--Hb_032202_240 Hb_001616_050 Hb_001616_050 Hb_002977_010--Hb_001616_050 Hb_002977_010--Hb_148209_020 Hb_012395_160 Hb_012395_160 Hb_148209_020--Hb_012395_160 Hb_148209_020--Hb_002477_150 Hb_005399_020 Hb_005399_020 Hb_148209_020--Hb_005399_020 Hb_005946_170 Hb_005946_170 Hb_002813_010--Hb_005946_170 Hb_001080_270 Hb_001080_270 Hb_002813_010--Hb_001080_270 Hb_000421_120 Hb_000421_120 Hb_002813_010--Hb_000421_120 Hb_000865_080 Hb_000865_080 Hb_002813_010--Hb_000865_080 Hb_002524_040 Hb_002524_040 Hb_002813_010--Hb_002524_040 Hb_004162_280 Hb_004162_280 Hb_002813_010--Hb_004162_280 Hb_002477_150--Hb_011465_030 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_001584_170--Hb_003878_140 Hb_001584_170--Hb_000865_080 Hb_004734_060 Hb_004734_060 Hb_001584_170--Hb_004734_060 Hb_000224_060 Hb_000224_060 Hb_001584_170--Hb_000224_060 Hb_001584_170--Hb_012395_160 Hb_001584_170--Hb_002977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
393.908 484.489 63.8367 80.4369 384.16 439.821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
177.221 162.701 117.037 109.301 57.6397

CAGE analysis