Hb_012395_160

Information

Type -
Description -
Location Contig12395: 78191-86082
Sequence    

Annotation

kegg
ID pop:POPTR_0008s17140g
description POPTRDRAFT_820827; transducin family protein
nr
ID XP_012077597.1
description PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
swissprot
ID Q94BR4
description Pre-mRNA-processing factor 19 homolog 1 OS=Arabidopsis thaliana GN=PRP19A PE=1 SV=1
trembl
ID A0A067KEA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12862 PE=4 SV=1
Gene Ontology
ID GO:0004842
description transducin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07277: 78218-86088
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012395_160 0.0 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
2 Hb_005399_020 0.064065869 - - hypothetical protein CISIN_1g022820mg [Citrus sinensis]
3 Hb_148209_020 0.0730532271 - - PREDICTED: SWI/SNF complex subunit SWI3D isoform X1 [Jatropha curcas]
4 Hb_001584_170 0.0817888597 - - neutral/alkaline invertase [Manihot esculenta]
5 Hb_005038_020 0.0867636761 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_006316_070 0.0948903208 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_000116_280 0.096380152 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
8 Hb_002849_080 0.0964447885 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
9 Hb_000735_120 0.0971124752 - - PREDICTED: pentatricopeptide repeat-containing protein At3g25210, mitochondrial [Jatropha curcas]
10 Hb_002977_010 0.0982053708 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
11 Hb_004310_050 0.1021186884 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
12 Hb_000174_200 0.1039440147 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
13 Hb_089435_010 0.1063637263 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Vitis vinifera]
14 Hb_005946_170 0.107107207 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
15 Hb_003866_020 0.1077122091 - - conserved hypothetical protein [Ricinus communis]
16 Hb_032202_240 0.1128330619 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
17 Hb_000046_450 0.1128982984 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
18 Hb_003878_140 0.113412006 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 7 [Jatropha curcas]
19 Hb_000865_080 0.1160121147 - - arsenite-resistance protein, putative [Ricinus communis]
20 Hb_005144_040 0.1164385969 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]

Gene co-expression network

sample Hb_012395_160 Hb_012395_160 Hb_005399_020 Hb_005399_020 Hb_012395_160--Hb_005399_020 Hb_148209_020 Hb_148209_020 Hb_012395_160--Hb_148209_020 Hb_001584_170 Hb_001584_170 Hb_012395_160--Hb_001584_170 Hb_005038_020 Hb_005038_020 Hb_012395_160--Hb_005038_020 Hb_006316_070 Hb_006316_070 Hb_012395_160--Hb_006316_070 Hb_000116_280 Hb_000116_280 Hb_012395_160--Hb_000116_280 Hb_005399_020--Hb_000116_280 Hb_005399_020--Hb_005038_020 Hb_000685_080 Hb_000685_080 Hb_005399_020--Hb_000685_080 Hb_000367_290 Hb_000367_290 Hb_005399_020--Hb_000367_290 Hb_005399_020--Hb_148209_020 Hb_002849_080 Hb_002849_080 Hb_148209_020--Hb_002849_080 Hb_148209_020--Hb_006316_070 Hb_002477_150 Hb_002477_150 Hb_148209_020--Hb_002477_150 Hb_002977_010 Hb_002977_010 Hb_148209_020--Hb_002977_010 Hb_003878_140 Hb_003878_140 Hb_001584_170--Hb_003878_140 Hb_000865_080 Hb_000865_080 Hb_001584_170--Hb_000865_080 Hb_004734_060 Hb_004734_060 Hb_001584_170--Hb_004734_060 Hb_000224_060 Hb_000224_060 Hb_001584_170--Hb_000224_060 Hb_001584_170--Hb_002977_010 Hb_005038_020--Hb_002849_080 Hb_005038_020--Hb_148209_020 Hb_002078_420 Hb_002078_420 Hb_005038_020--Hb_002078_420 Hb_000174_200 Hb_000174_200 Hb_005038_020--Hb_000174_200 Hb_006316_070--Hb_002849_080 Hb_006316_070--Hb_002977_010 Hb_002813_010 Hb_002813_010 Hb_006316_070--Hb_002813_010 Hb_006316_070--Hb_002477_150 Hb_006316_070--Hb_001584_170 Hb_003018_160 Hb_003018_160 Hb_000116_280--Hb_003018_160 Hb_000116_280--Hb_000367_290 Hb_001975_020 Hb_001975_020 Hb_000116_280--Hb_001975_020 Hb_006816_300 Hb_006816_300 Hb_000116_280--Hb_006816_300 Hb_002105_080 Hb_002105_080 Hb_000116_280--Hb_002105_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
312.814 333.228 51.895 47.6187 287.041 409.052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.991 72.4425 160.52 86.4821 33.8057

CAGE analysis