Hb_000034_160

Information

Type -
Description -
Location Contig34: 309358-313920
Sequence    

Annotation

kegg
ID rcu:RCOM_1039580
description argininosuccinate lyase, putative (EC:4.3.2.1)
nr
ID KCW68514.1
description hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
swissprot
ID Q9LEU8
description Argininosuccinate lyase, chloroplastic OS=Arabidopsis thaliana GN=At5g10920 PE=2 SV=1
trembl
ID A0A059BRE8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02151 PE=3 SV=1
Gene Ontology
ID GO:0004056
description argininosuccinate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35496: 309361-313940 , PASA_asmbl_35497: 311956-312431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000034_160 0.0 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
2 Hb_007403_050 0.0619001639 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
3 Hb_004032_180 0.0855642425 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
4 Hb_000283_130 0.0856771999 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
5 Hb_003373_040 0.0872016687 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
6 Hb_000457_050 0.0914936414 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
7 Hb_010738_010 0.0971065277 - - PREDICTED: B2 protein [Jatropha curcas]
8 Hb_000258_120 0.0975770773 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
9 Hb_000236_220 0.0978246115 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
10 Hb_000061_490 0.0981075926 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
11 Hb_009771_100 0.0981532532 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
12 Hb_009780_100 0.0982108034 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
13 Hb_001141_370 0.0983084365 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
14 Hb_001662_030 0.0983653044 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
15 Hb_000753_100 0.1007666642 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
16 Hb_011909_060 0.1018948111 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
17 Hb_002666_080 0.102355274 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_093084_070 0.102818614 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
19 Hb_000363_130 0.1030208048 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
20 Hb_017075_030 0.1030658533 - - helicase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000034_160 Hb_000034_160 Hb_007403_050 Hb_007403_050 Hb_000034_160--Hb_007403_050 Hb_004032_180 Hb_004032_180 Hb_000034_160--Hb_004032_180 Hb_000283_130 Hb_000283_130 Hb_000034_160--Hb_000283_130 Hb_003373_040 Hb_003373_040 Hb_000034_160--Hb_003373_040 Hb_000457_050 Hb_000457_050 Hb_000034_160--Hb_000457_050 Hb_010738_010 Hb_010738_010 Hb_000034_160--Hb_010738_010 Hb_011465_030 Hb_011465_030 Hb_007403_050--Hb_011465_030 Hb_001946_300 Hb_001946_300 Hb_007403_050--Hb_001946_300 Hb_000363_130 Hb_000363_130 Hb_007403_050--Hb_000363_130 Hb_007403_050--Hb_004032_180 Hb_007403_050--Hb_000283_130 Hb_000865_080 Hb_000865_080 Hb_004032_180--Hb_000865_080 Hb_002163_010 Hb_002163_010 Hb_004032_180--Hb_002163_010 Hb_017075_030 Hb_017075_030 Hb_004032_180--Hb_017075_030 Hb_030565_090 Hb_030565_090 Hb_004032_180--Hb_030565_090 Hb_001454_320 Hb_001454_320 Hb_004032_180--Hb_001454_320 Hb_005883_010 Hb_005883_010 Hb_000283_130--Hb_005883_010 Hb_000283_130--Hb_010738_010 Hb_000406_240 Hb_000406_240 Hb_000283_130--Hb_000406_240 Hb_000283_130--Hb_017075_030 Hb_000283_130--Hb_000457_050 Hb_004635_050 Hb_004635_050 Hb_000283_130--Hb_004635_050 Hb_093084_070 Hb_093084_070 Hb_003373_040--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_003373_040--Hb_000236_220 Hb_004109_030 Hb_004109_030 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_000261_220 Hb_000261_220 Hb_000457_050--Hb_000261_220 Hb_008511_030 Hb_008511_030 Hb_000457_050--Hb_008511_030 Hb_003299_030 Hb_003299_030 Hb_000457_050--Hb_003299_030 Hb_009771_100 Hb_009771_100 Hb_000457_050--Hb_009771_100 Hb_000152_340 Hb_000152_340 Hb_000457_050--Hb_000152_340 Hb_032202_110 Hb_032202_110 Hb_010738_010--Hb_032202_110 Hb_000169_130 Hb_000169_130 Hb_010738_010--Hb_000169_130 Hb_010738_010--Hb_005883_010 Hb_111198_010 Hb_111198_010 Hb_010738_010--Hb_111198_010 Hb_000103_100 Hb_000103_100 Hb_010738_010--Hb_000103_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
131.696 170.683 71.3225 53.5823 98.901 104.646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.9345 35.1003 52.0566 59.6782 19.2032

CAGE analysis