Hb_001189_130

Information

Type transcription factor
Description TF Family: NAC
Location Contig1189: 92869-106630
Sequence    

Annotation

kegg
ID rcu:RCOM_1341380
description hypothetical protein
nr
ID XP_012083074.1
description PREDICTED: protein ATAF2-like [Jatropha curcas]
swissprot
ID F4JN35
description Protein NTM1-like 9 OS=Arabidopsis thaliana GN=NTL9 PE=1 SV=1
trembl
ID R4NG02
description NAC transcription factor 073 OS=Jatropha curcas GN=JCGZ_14163 PE=4 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 69-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05599: 93596-94206 , PASA_asmbl_05600: 94216-95066 , PASA_asmbl_05601: 97027-98342 , PASA_asmbl_05602: 105802-123109 , PASA_asmbl_05603: 105802-123109
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001189_130 0.0 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
2 Hb_000449_050 0.091072735 - - Protein bem46, putative [Ricinus communis]
3 Hb_001141_370 0.0929145767 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
4 Hb_000340_110 0.0940830902 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
5 Hb_000152_340 0.095260273 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
6 Hb_000540_120 0.10104034 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
7 Hb_001662_030 0.1016835482 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
8 Hb_000457_050 0.1050838449 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
9 Hb_009771_100 0.1060013473 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
10 Hb_000953_030 0.111134263 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
11 Hb_007403_050 0.1113532593 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
12 Hb_001902_060 0.1120209473 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]
13 Hb_000034_160 0.1127246397 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
14 Hb_002326_020 0.1142707741 - - hypothetical protein POPTR_0002s13160g [Populus trichocarpa]
15 Hb_011465_030 0.1158256256 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_001301_320 0.1164723292 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
17 Hb_003373_040 0.1168184585 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
18 Hb_000390_220 0.1170826511 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
19 Hb_007894_130 0.118046161 - - hypothetical protein RCOM_0584960 [Ricinus communis]
20 Hb_000544_060 0.1184517975 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]

Gene co-expression network

sample Hb_001189_130 Hb_001189_130 Hb_000449_050 Hb_000449_050 Hb_001189_130--Hb_000449_050 Hb_001141_370 Hb_001141_370 Hb_001189_130--Hb_001141_370 Hb_000340_110 Hb_000340_110 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_000540_120 Hb_000540_120 Hb_001189_130--Hb_000540_120 Hb_001662_030 Hb_001662_030 Hb_001189_130--Hb_001662_030 Hb_000449_050--Hb_000340_110 Hb_001638_040 Hb_001638_040 Hb_000449_050--Hb_001638_040 Hb_002477_150 Hb_002477_150 Hb_000449_050--Hb_002477_150 Hb_124677_060 Hb_124677_060 Hb_000449_050--Hb_124677_060 Hb_004032_180 Hb_004032_180 Hb_000449_050--Hb_004032_180 Hb_000544_060 Hb_000544_060 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_001141_370--Hb_000340_110 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_001902_060 Hb_001902_060 Hb_000152_340--Hb_001902_060 Hb_000953_030 Hb_000953_030 Hb_000152_340--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_000152_340--Hb_000140_080 Hb_000032_010 Hb_000032_010 Hb_000152_340--Hb_000032_010 Hb_000116_060 Hb_000116_060 Hb_000152_340--Hb_000116_060 Hb_000152_340--Hb_003858_090 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_075449_020 Hb_075449_020 Hb_001662_030--Hb_075449_020 Hb_000390_220 Hb_000390_220 Hb_001662_030--Hb_000390_220 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5173 25.3149 6.52585 8.38216 18.9708 11.0688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.53117 5.85413 4.61551 6.52424 2.49287

CAGE analysis