Hb_000390_220

Information

Type -
Description -
Location Contig390: 236991-246631
Sequence    

Annotation

kegg
ID vvi:100244219
description uncharacterized LOC100244219
nr
ID XP_002270810.2
description PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7T7L7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0039g01680 PE=4 SV=1
Gene Ontology
ID GO:0004611
description PREDICTED: uncharacterized protein LOC100244219

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39118: 242967-243450 , PASA_asmbl_39119: 243119-243516 , PASA_asmbl_39121: 247265-248273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000390_220 0.0 - - PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera]
2 Hb_001662_030 0.1039111067 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
3 Hb_075449_020 0.1159442878 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
4 Hb_001189_130 0.1170826511 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
5 Hb_025306_010 0.1226246664 transcription factor TF Family: MYB-related syringolide-induced protein 1-3-1B [Populus trichocarpa]
6 Hb_001307_010 0.1308507336 - - PREDICTED: uncharacterized protein LOC103939917 [Pyrus x bretschneideri]
7 Hb_000953_030 0.131111141 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
8 Hb_000538_010 0.1336362977 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 1 isoform X2 [Jatropha curcas]
9 Hb_000283_130 0.1352347932 - - PREDICTED: PRA1 family protein E-like [Populus euphratica]
10 Hb_156144_030 0.1354908831 - - hypothetical protein RCOM_0187400 [Ricinus communis]
11 Hb_031711_010 0.1386866103 - - PREDICTED: CDPK-related kinase 4-like isoform X1 [Jatropha curcas]
12 Hb_001999_250 0.1404788302 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
13 Hb_004017_040 0.1410421703 - - kinetochore protein nuf2, putative [Ricinus communis]
14 Hb_000457_050 0.1414102054 - - PREDICTED: tether containing UBX domain for GLUT4 [Jatropha curcas]
15 Hb_011465_030 0.143438736 - - PREDICTED: B2 protein [Jatropha curcas]
16 Hb_007403_050 0.1436053901 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
17 Hb_009771_100 0.1453229368 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
18 Hb_011909_060 0.1459777821 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
19 Hb_167381_020 0.1492884064 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
20 Hb_080147_080 0.1503564744 - - peroxiredoxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_000390_220 Hb_000390_220 Hb_001662_030 Hb_001662_030 Hb_000390_220--Hb_001662_030 Hb_075449_020 Hb_075449_020 Hb_000390_220--Hb_075449_020 Hb_001189_130 Hb_001189_130 Hb_000390_220--Hb_001189_130 Hb_025306_010 Hb_025306_010 Hb_000390_220--Hb_025306_010 Hb_001307_010 Hb_001307_010 Hb_000390_220--Hb_001307_010 Hb_000953_030 Hb_000953_030 Hb_000390_220--Hb_000953_030 Hb_000034_160 Hb_000034_160 Hb_001662_030--Hb_000034_160 Hb_000258_120 Hb_000258_120 Hb_001662_030--Hb_000258_120 Hb_001662_030--Hb_001189_130 Hb_001662_030--Hb_075449_020 Hb_000283_130 Hb_000283_130 Hb_001662_030--Hb_000283_130 Hb_075449_020--Hb_025306_010 Hb_000540_120 Hb_000540_120 Hb_075449_020--Hb_000540_120 Hb_011465_030 Hb_011465_030 Hb_075449_020--Hb_011465_030 Hb_001999_250 Hb_001999_250 Hb_075449_020--Hb_001999_250 Hb_000449_050 Hb_000449_050 Hb_001189_130--Hb_000449_050 Hb_001141_370 Hb_001141_370 Hb_001189_130--Hb_001141_370 Hb_000340_110 Hb_000340_110 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_001189_130--Hb_000540_120 Hb_025306_010--Hb_001662_030 Hb_003906_190 Hb_003906_190 Hb_025306_010--Hb_003906_190 Hb_006346_040 Hb_006346_040 Hb_025306_010--Hb_006346_040 Hb_025306_010--Hb_000540_120 Hb_167381_020 Hb_167381_020 Hb_001307_010--Hb_167381_020 Hb_000422_110 Hb_000422_110 Hb_001307_010--Hb_000422_110 Hb_031711_010 Hb_031711_010 Hb_001307_010--Hb_031711_010 Hb_009771_100 Hb_009771_100 Hb_001307_010--Hb_009771_100 Hb_011909_060 Hb_011909_060 Hb_001307_010--Hb_011909_060 Hb_001454_220 Hb_001454_220 Hb_001307_010--Hb_001454_220 Hb_000953_030--Hb_000152_340 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_005539_190 Hb_005539_190 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_102129_070 Hb_102129_070 Hb_000953_030--Hb_102129_070 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18603 15.3699 5.19004 3.43947 12.09 6.59726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.94083 3.29266 1.40082 1.52496 0.855445

CAGE analysis