Hb_000449_050

Information

Type -
Description -
Location Contig449: 18645-22676
Sequence    

Annotation

kegg
ID rcu:RCOM_0531790
description Protein bem46, putative
nr
ID XP_002526957.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5ZJ01
description Alpha/beta hydrolase domain-containing protein 17B OS=Gallus gallus GN=ABHD17B PE=2 SV=1
trembl
ID B9SLT8
description Protein bem46, putative OS=Ricinus communis GN=RCOM_0531790 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43108: 18731-22499
cDNA
(Sanger)
(ID:Location)		 052_B11.ab1: 19280-22498

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000449_050 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_001189_130 0.091072735 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
3 Hb_000340_110 0.1097200631 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
4 Hb_001638_040 0.1129509709 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
5 Hb_002477_150 0.1185671559 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
6 Hb_124677_060 0.1202788073 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_004032_180 0.1220220696 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
8 Hb_001511_110 0.1222557533 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
9 Hb_001141_370 0.1237494125 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
10 Hb_011465_030 0.1239228592 - - PREDICTED: B2 protein [Jatropha curcas]
11 Hb_002745_010 0.124998481 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
12 Hb_000540_120 0.1254296008 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
13 Hb_000932_070 0.1270716325 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
14 Hb_000594_040 0.1272903497 - - hypothetical protein L484_013922 [Morus notabilis]
15 Hb_007894_130 0.129512341 - - hypothetical protein RCOM_0584960 [Ricinus communis]
16 Hb_001504_190 0.1307692209 - - double-stranded RNA binding protein, putative [Ricinus communis]
17 Hb_005260_010 0.1310209219 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
18 Hb_000243_380 0.131852233 - - PREDICTED: histone H1 [Jatropha curcas]
19 Hb_000258_120 0.1327892716 - - PREDICTED: uncharacterized protein LOC105630440 [Jatropha curcas]
20 Hb_001662_030 0.1340496338 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]

Gene co-expression network

sample Hb_000449_050 Hb_000449_050 Hb_001189_130 Hb_001189_130 Hb_000449_050--Hb_001189_130 Hb_000340_110 Hb_000340_110 Hb_000449_050--Hb_000340_110 Hb_001638_040 Hb_001638_040 Hb_000449_050--Hb_001638_040 Hb_002477_150 Hb_002477_150 Hb_000449_050--Hb_002477_150 Hb_124677_060 Hb_124677_060 Hb_000449_050--Hb_124677_060 Hb_004032_180 Hb_004032_180 Hb_000449_050--Hb_004032_180 Hb_001141_370 Hb_001141_370 Hb_001189_130--Hb_001141_370 Hb_001189_130--Hb_000340_110 Hb_000152_340 Hb_000152_340 Hb_001189_130--Hb_000152_340 Hb_000540_120 Hb_000540_120 Hb_001189_130--Hb_000540_120 Hb_001662_030 Hb_001662_030 Hb_001189_130--Hb_001662_030 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_000340_110--Hb_001141_370 Hb_001511_110 Hb_001511_110 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_010831_020 Hb_010831_020 Hb_001638_040--Hb_010831_020 Hb_001638_040--Hb_000540_120 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_002739_150 Hb_002739_150 Hb_001638_040--Hb_002739_150 Hb_011465_030 Hb_011465_030 Hb_002477_150--Hb_011465_030 Hb_148209_020 Hb_148209_020 Hb_002477_150--Hb_148209_020 Hb_005946_170 Hb_005946_170 Hb_002477_150--Hb_005946_170 Hb_000265_250 Hb_000265_250 Hb_002477_150--Hb_000265_250 Hb_002659_060 Hb_002659_060 Hb_002477_150--Hb_002659_060 Hb_001946_300 Hb_001946_300 Hb_002477_150--Hb_001946_300 Hb_001053_030 Hb_001053_030 Hb_124677_060--Hb_001053_030 Hb_002745_010 Hb_002745_010 Hb_124677_060--Hb_002745_010 Hb_001059_100 Hb_001059_100 Hb_124677_060--Hb_001059_100 Hb_000140_070 Hb_000140_070 Hb_124677_060--Hb_000140_070 Hb_001220_030 Hb_001220_030 Hb_124677_060--Hb_001220_030 Hb_124677_060--Hb_000340_110 Hb_000865_080 Hb_000865_080 Hb_004032_180--Hb_000865_080 Hb_002163_010 Hb_002163_010 Hb_004032_180--Hb_002163_010 Hb_017075_030 Hb_017075_030 Hb_004032_180--Hb_017075_030 Hb_000034_160 Hb_000034_160 Hb_004032_180--Hb_000034_160 Hb_030565_090 Hb_030565_090 Hb_004032_180--Hb_030565_090 Hb_001454_320 Hb_001454_320 Hb_004032_180--Hb_001454_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.873 25.2452 5.3194 5.40438 16.2127 12.059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8409 4.44365 2.65069 9.45677 2.30141

CAGE analysis