Hb_002745_010

Information

Type -
Description -
Location Contig2745: 10942-19166
Sequence    

Annotation

kegg
ID cmo:103501112
description SUMO-conjugating enzyme SCE1
nr
ID XP_004151860.1
description PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
swissprot
ID Q42551
description SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1
trembl
ID A0A0A0LNC3
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G428410 PE=3 SV=1
Gene Ontology
ID GO:0019789
description sumo-conjugating enzyme sce1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28745: 11008-19162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002745_010 0.0 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
2 Hb_001220_030 0.0719692728 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
3 Hb_076693_020 0.0810161556 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
4 Hb_124677_060 0.0878746168 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
5 Hb_015026_070 0.0945324486 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 isoform X1 [Jatropha curcas]
6 Hb_000140_070 0.0947491638 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
7 Hb_001348_150 0.0964343248 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
8 Hb_001053_030 0.1005472477 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_000291_190 0.1039092487 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
10 Hb_023827_040 0.106604333 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
11 Hb_173953_010 0.1077876837 - - hypothetical protein RCOM_1267370 [Ricinus communis]
12 Hb_001059_100 0.1081662758 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
13 Hb_000421_120 0.1081820249 - - PREDICTED: NEDD8-specific protease 1 [Jatropha curcas]
14 Hb_000243_380 0.1084500307 - - PREDICTED: histone H1 [Jatropha curcas]
15 Hb_000865_080 0.1086873893 - - arsenite-resistance protein, putative [Ricinus communis]
16 Hb_005551_060 0.1088460024 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
17 Hb_000322_150 0.1095877074 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
18 Hb_001610_110 0.1107142574 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
19 Hb_000218_010 0.1115464547 - - -
20 Hb_000574_540 0.1124304295 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002745_010 Hb_002745_010 Hb_001220_030 Hb_001220_030 Hb_002745_010--Hb_001220_030 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_124677_060 Hb_124677_060 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_000140_070 Hb_000140_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_001220_030--Hb_000140_070 Hb_000291_190 Hb_000291_190 Hb_001220_030--Hb_000291_190 Hb_001220_030--Hb_124677_060 Hb_000865_080 Hb_000865_080 Hb_001220_030--Hb_000865_080 Hb_000059_210 Hb_000059_210 Hb_001220_030--Hb_000059_210 Hb_000322_150 Hb_000322_150 Hb_076693_020--Hb_000322_150 Hb_045793_010 Hb_045793_010 Hb_076693_020--Hb_045793_010 Hb_000441_070 Hb_000441_070 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040 Hb_001053_030 Hb_001053_030 Hb_124677_060--Hb_001053_030 Hb_001059_100 Hb_001059_100 Hb_124677_060--Hb_001059_100 Hb_124677_060--Hb_000140_070 Hb_000340_110 Hb_000340_110 Hb_124677_060--Hb_000340_110 Hb_015026_070--Hb_076693_020 Hb_015026_070--Hb_023827_040 Hb_015026_070--Hb_045793_010 Hb_015026_070--Hb_001059_100 Hb_015026_070--Hb_124677_060 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_000140_070--Hb_076693_020 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_000140_070--Hb_006847_040 Hb_001247_120 Hb_001247_120 Hb_001348_150--Hb_001247_120 Hb_001348_150--Hb_076693_020 Hb_001348_150--Hb_001053_030 Hb_001348_150--Hb_000140_070 Hb_011512_080 Hb_011512_080 Hb_001348_150--Hb_011512_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
302.017 537.285 114.339 101.798 323.057 295.124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
306.974 218.788 161.229 174.132 76.2953

CAGE analysis