Hb_001220_030

Information

Type -
Description -
Location Contig1220: 39494-55014
Sequence    

Annotation

kegg
ID rcu:RCOM_0848310
description hypothetical protein
nr
ID XP_012089773.1
description PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JG62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00414 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06684: 40422-41216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001220_030 0.0 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
2 Hb_002745_010 0.0719692728 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
3 Hb_000140_070 0.0874444058 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
4 Hb_000291_190 0.0923483538 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
5 Hb_124677_060 0.0970155124 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
6 Hb_000865_080 0.101059518 - - arsenite-resistance protein, putative [Ricinus communis]
7 Hb_000059_210 0.1011388292 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000336_140 0.102793 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005551_060 0.1031886613 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
10 Hb_000032_620 0.1038708105 - - hypothetical protein RCOM_1311830 [Ricinus communis]
11 Hb_005396_050 0.105837252 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
12 Hb_076693_020 0.1077053893 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
13 Hb_001059_100 0.1132590377 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
14 Hb_001053_030 0.1133556556 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
15 Hb_004785_060 0.1144674147 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
16 Hb_000224_060 0.1151246529 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
17 Hb_006847_040 0.1167927905 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 1 [Jatropha curcas]
18 Hb_002813_010 0.1170158557 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
19 Hb_173953_010 0.1183290296 - - hypothetical protein RCOM_1267370 [Ricinus communis]
20 Hb_001348_150 0.1189006403 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_001220_030 Hb_001220_030 Hb_002745_010 Hb_002745_010 Hb_001220_030--Hb_002745_010 Hb_000140_070 Hb_000140_070 Hb_001220_030--Hb_000140_070 Hb_000291_190 Hb_000291_190 Hb_001220_030--Hb_000291_190 Hb_124677_060 Hb_124677_060 Hb_001220_030--Hb_124677_060 Hb_000865_080 Hb_000865_080 Hb_001220_030--Hb_000865_080 Hb_000059_210 Hb_000059_210 Hb_001220_030--Hb_000059_210 Hb_076693_020 Hb_076693_020 Hb_002745_010--Hb_076693_020 Hb_002745_010--Hb_124677_060 Hb_015026_070 Hb_015026_070 Hb_002745_010--Hb_015026_070 Hb_002745_010--Hb_000140_070 Hb_001348_150 Hb_001348_150 Hb_002745_010--Hb_001348_150 Hb_001059_100 Hb_001059_100 Hb_000140_070--Hb_001059_100 Hb_003373_040 Hb_003373_040 Hb_000140_070--Hb_003373_040 Hb_000140_070--Hb_076693_020 Hb_093084_070 Hb_093084_070 Hb_000140_070--Hb_093084_070 Hb_006847_040 Hb_006847_040 Hb_000140_070--Hb_006847_040 Hb_000291_190--Hb_000865_080 Hb_000224_060 Hb_000224_060 Hb_000291_190--Hb_000224_060 Hb_000025_360 Hb_000025_360 Hb_000291_190--Hb_000025_360 Hb_006586_050 Hb_006586_050 Hb_000291_190--Hb_006586_050 Hb_003878_140 Hb_003878_140 Hb_000291_190--Hb_003878_140 Hb_001616_050 Hb_001616_050 Hb_000291_190--Hb_001616_050 Hb_001053_030 Hb_001053_030 Hb_124677_060--Hb_001053_030 Hb_124677_060--Hb_001059_100 Hb_124677_060--Hb_000140_070 Hb_000340_110 Hb_000340_110 Hb_124677_060--Hb_000340_110 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_004970_150 Hb_004970_150 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000865_080--Hb_000025_360 Hb_001936_020 Hb_001936_020 Hb_000059_210--Hb_001936_020 Hb_000059_210--Hb_006586_050 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000059_210--Hb_000291_190 Hb_033152_080 Hb_033152_080 Hb_000059_210--Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_000059_210--Hb_004734_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.263 60.2073 8.13833 15.226 37.0626 38.1841
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.5463 20.7836 22.564 20.7509 4.81419

CAGE analysis