Hb_001247_120

Information

Type transcription factor
Description TF Family: C3H
Location Contig1247: 67699-69121
Sequence    

Annotation

kegg
ID rcu:RCOM_1436190
description hypothetical protein
nr
ID XP_012088844.1
description PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
swissprot
ID Q0JP11
description Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=Os01g0252200 PE=2 SV=2
trembl
ID A0A067JTM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23183 PE=4 SV=1
Gene Ontology
ID GO:0008270
description zinc finger ccch domain-containing protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07476: 67743-69128 , PASA_asmbl_07477: 64059-69184 , PASA_asmbl_07478: 64059-69184 , PASA_asmbl_07481: 67765-69048
cDNA
(Sanger)
(ID:Location)		 008_D21.ab1: 64265-69184

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001247_120 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
2 Hb_005551_060 0.0840987849 - - PREDICTED: uncharacterized protein LOC105635819 [Jatropha curcas]
3 Hb_001860_020 0.0878322493 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
4 Hb_001348_150 0.0890651918 - - PREDICTED: uncharacterized protein At4g08330, chloroplastic [Jatropha curcas]
5 Hb_001864_060 0.1040997321 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
6 Hb_000025_330 0.1062638803 - - hypothetical protein JCGZ_22759 [Jatropha curcas]
7 Hb_000672_030 0.1105396004 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
8 Hb_027506_020 0.1151098023 - - PREDICTED: F-box/kelch-repeat protein At1g30090 [Jatropha curcas]
9 Hb_146464_010 0.1153550874 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
10 Hb_000140_070 0.1164056321 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
11 Hb_002745_010 0.1169501839 - - PREDICTED: SUMO-conjugating enzyme SCE1 [Cucumis sativus]
12 Hb_003175_030 0.1220913102 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
13 Hb_003752_100 0.124865086 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
14 Hb_116086_010 0.1279062944 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
15 Hb_155396_010 0.127990965 - - TMV resistance protein N, putative [Ricinus communis]
16 Hb_001828_130 0.128245166 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
17 Hb_000179_070 0.1301859609 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
18 Hb_005306_190 0.130609458 - - Mitochondrial import inner membrane translocase subunit tim23, putative [Ricinus communis]
19 Hb_000540_120 0.1310973818 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
20 Hb_003373_040 0.1320407338 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]

Gene co-expression network

sample Hb_001247_120 Hb_001247_120 Hb_005551_060 Hb_005551_060 Hb_001247_120--Hb_005551_060 Hb_001860_020 Hb_001860_020 Hb_001247_120--Hb_001860_020 Hb_001348_150 Hb_001348_150 Hb_001247_120--Hb_001348_150 Hb_001864_060 Hb_001864_060 Hb_001247_120--Hb_001864_060 Hb_000025_330 Hb_000025_330 Hb_001247_120--Hb_000025_330 Hb_000672_030 Hb_000672_030 Hb_001247_120--Hb_000672_030 Hb_027506_020 Hb_027506_020 Hb_005551_060--Hb_027506_020 Hb_001220_030 Hb_001220_030 Hb_005551_060--Hb_001220_030 Hb_000140_070 Hb_000140_070 Hb_005551_060--Hb_000140_070 Hb_002745_010 Hb_002745_010 Hb_005551_060--Hb_002745_010 Hb_146464_010 Hb_146464_010 Hb_005551_060--Hb_146464_010 Hb_001860_020--Hb_000672_030 Hb_001189_130 Hb_001189_130 Hb_001860_020--Hb_001189_130 Hb_046117_010 Hb_046117_010 Hb_001860_020--Hb_046117_010 Hb_001860_020--Hb_001348_150 Hb_000540_120 Hb_000540_120 Hb_001860_020--Hb_000540_120 Hb_001348_150--Hb_002745_010 Hb_076693_020 Hb_076693_020 Hb_001348_150--Hb_076693_020 Hb_001053_030 Hb_001053_030 Hb_001348_150--Hb_001053_030 Hb_001348_150--Hb_000140_070 Hb_011512_080 Hb_011512_080 Hb_001348_150--Hb_011512_080 Hb_004109_030 Hb_004109_030 Hb_001864_060--Hb_004109_030 Hb_008511_090 Hb_008511_090 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_116086_010 Hb_116086_010 Hb_001864_060--Hb_116086_010 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_001864_060--Hb_000025_330 Hb_000025_330--Hb_000140_070 Hb_001054_030 Hb_001054_030 Hb_000025_330--Hb_001054_030 Hb_000525_010 Hb_000525_010 Hb_000025_330--Hb_000525_010 Hb_001123_290 Hb_001123_290 Hb_000025_330--Hb_001123_290 Hb_001225_030 Hb_001225_030 Hb_000672_030--Hb_001225_030 Hb_030116_010 Hb_030116_010 Hb_000672_030--Hb_030116_010 Hb_003175_030 Hb_003175_030 Hb_000672_030--Hb_003175_030 Hb_003682_030 Hb_003682_030 Hb_000672_030--Hb_003682_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
45.7902 122.944 22.8461 42.7976 50.3821 51.9691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.9758 54.7864 32.1608 20.2748 14.6972

CAGE analysis