Hb_046117_010

Information

Type -
Description -
Location Contig46117: 1139-2712
Sequence    

Annotation

kegg
ID rcu:RCOM_1280190
description zinc finger protein, putative
nr
ID XP_012072807.1
description PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
swissprot
ID Q9ZNU9
description Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana GN=SAP3 PE=2 SV=1
trembl
ID A0A067KRF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07939 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc finger a20 and an1 domain-containing stress-associated protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43736: 1310-2696
cDNA
(Sanger)
(ID:Location)		 016_B04.ab1: 1457-2247 , 029_B01.ab1: 1457-2180

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046117_010 0.0 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
2 Hb_000465_080 0.0992925043 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
3 Hb_009771_100 0.1082428996 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
4 Hb_012226_010 0.1113537398 - - PREDICTED: protein DGCR14 [Jatropha curcas]
5 Hb_000540_120 0.1175732999 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
6 Hb_003125_030 0.1192578981 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
7 Hb_000061_490 0.1224566396 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
8 Hb_004218_090 0.1252305163 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
9 Hb_001860_020 0.1259997817 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
10 Hb_011909_060 0.1268729518 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
11 Hb_000120_420 0.1292125562 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
12 Hb_000672_030 0.130277653 - - PREDICTED: uncharacterized protein LOC105628931 isoform X1 [Jatropha curcas]
13 Hb_001189_130 0.1330587754 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]
14 Hb_001662_030 0.1336049388 - - PREDICTED: F-box protein SKIP23-like [Populus euphratica]
15 Hb_029223_050 0.133931897 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
16 Hb_075449_020 0.1366552345 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
17 Hb_000363_280 0.1367582204 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
18 Hb_001247_120 0.1395452267 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
19 Hb_005000_300 0.1397758952 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
20 Hb_155396_010 0.1409404276 - - TMV resistance protein N, putative [Ricinus communis]

Gene co-expression network

sample Hb_046117_010 Hb_046117_010 Hb_000465_080 Hb_000465_080 Hb_046117_010--Hb_000465_080 Hb_009771_100 Hb_009771_100 Hb_046117_010--Hb_009771_100 Hb_012226_010 Hb_012226_010 Hb_046117_010--Hb_012226_010 Hb_000540_120 Hb_000540_120 Hb_046117_010--Hb_000540_120 Hb_003125_030 Hb_003125_030 Hb_046117_010--Hb_003125_030 Hb_000061_490 Hb_000061_490 Hb_046117_010--Hb_000061_490 Hb_005000_300 Hb_005000_300 Hb_000465_080--Hb_005000_300 Hb_004218_090 Hb_004218_090 Hb_000465_080--Hb_004218_090 Hb_003506_070 Hb_003506_070 Hb_000465_080--Hb_003506_070 Hb_003120_050 Hb_003120_050 Hb_000465_080--Hb_003120_050 Hb_003078_030 Hb_003078_030 Hb_000465_080--Hb_003078_030 Hb_031711_010 Hb_031711_010 Hb_009771_100--Hb_031711_010 Hb_009780_100 Hb_009780_100 Hb_009771_100--Hb_009780_100 Hb_011909_060 Hb_011909_060 Hb_009771_100--Hb_011909_060 Hb_001141_370 Hb_001141_370 Hb_009771_100--Hb_001141_370 Hb_000457_050 Hb_000457_050 Hb_009771_100--Hb_000457_050 Hb_009771_100--Hb_000061_490 Hb_000340_110 Hb_000340_110 Hb_012226_010--Hb_000340_110 Hb_012226_010--Hb_003125_030 Hb_029223_050 Hb_029223_050 Hb_012226_010--Hb_029223_050 Hb_104265_030 Hb_104265_030 Hb_012226_010--Hb_104265_030 Hb_001511_110 Hb_001511_110 Hb_012226_010--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_012226_010--Hb_026198_040 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_010831_020 Hb_010831_020 Hb_000540_120--Hb_010831_020 Hb_000540_120--Hb_003125_030 Hb_003125_030--Hb_104265_030 Hb_003125_030--Hb_003506_070 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_000264_080 Hb_000264_080 Hb_000061_490--Hb_000264_080 Hb_007894_130 Hb_007894_130 Hb_000061_490--Hb_007894_130 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_000061_490--Hb_009780_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
163.066 388.366 102.926 101.842 126.476 99.6771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
101.337 82.4605 36.6539 46.0092 45.4386

CAGE analysis