Hb_000465_080

Information

Type -
Description -
Location Contig465: 43320-50392
Sequence    

Annotation

kegg
ID pop:POPTR_0003s07640g
description POPTRDRAFT_757043; hypothetical protein
nr
ID XP_012070021.1
description PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
swissprot
ID P97868
description E3 ubiquitin-protein ligase RBBP6 OS=Mus musculus GN=Rbbp6 PE=1 SV=5
trembl
ID B9GYD1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s07640g PE=4 SV=2
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase rbbp6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43948: 43312-48567 , PASA_asmbl_43949: 45045-45146 , PASA_asmbl_43950: 48830-50390
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000465_080 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
2 Hb_005000_300 0.0742970725 transcription factor TF Family: TRAF putative regulatory protein NPR1 [Hevea brasiliensis]
3 Hb_004218_090 0.0986318904 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_046117_010 0.0992925043 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
5 Hb_003506_070 0.1007365317 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
6 Hb_003120_050 0.1020709566 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
7 Hb_003078_030 0.1076056566 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
8 Hb_000836_370 0.1081047559 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
9 Hb_009771_100 0.114337243 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
10 Hb_012226_010 0.1168041782 - - PREDICTED: protein DGCR14 [Jatropha curcas]
11 Hb_000056_300 0.121042565 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
12 Hb_011909_060 0.1228692161 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
13 Hb_003018_040 0.1238846138 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
14 Hb_178127_010 0.1242306997 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
15 Hb_018301_010 0.125399966 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
16 Hb_127599_010 0.1283744048 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
17 Hb_012082_010 0.1285403637 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
18 Hb_000084_240 0.1299892595 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
19 Hb_000061_490 0.1305144196 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
20 Hb_001231_080 0.1309139773 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like isoform X1 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_000465_080 Hb_000465_080 Hb_005000_300 Hb_005000_300 Hb_000465_080--Hb_005000_300 Hb_004218_090 Hb_004218_090 Hb_000465_080--Hb_004218_090 Hb_046117_010 Hb_046117_010 Hb_000465_080--Hb_046117_010 Hb_003506_070 Hb_003506_070 Hb_000465_080--Hb_003506_070 Hb_003120_050 Hb_003120_050 Hb_000465_080--Hb_003120_050 Hb_003078_030 Hb_003078_030 Hb_000465_080--Hb_003078_030 Hb_000836_370 Hb_000836_370 Hb_005000_300--Hb_000836_370 Hb_000056_300 Hb_000056_300 Hb_005000_300--Hb_000056_300 Hb_005000_300--Hb_003078_030 Hb_001231_080 Hb_001231_080 Hb_005000_300--Hb_001231_080 Hb_005054_310 Hb_005054_310 Hb_005000_300--Hb_005054_310 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_006683_040 Hb_006683_040 Hb_004218_090--Hb_006683_040 Hb_000061_490 Hb_000061_490 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_046117_010--Hb_009771_100 Hb_012226_010 Hb_012226_010 Hb_046117_010--Hb_012226_010 Hb_000540_120 Hb_000540_120 Hb_046117_010--Hb_000540_120 Hb_003125_030 Hb_003125_030 Hb_046117_010--Hb_003125_030 Hb_046117_010--Hb_000061_490 Hb_003506_070--Hb_003125_030 Hb_000540_110 Hb_000540_110 Hb_003506_070--Hb_000540_110 Hb_001525_010 Hb_001525_010 Hb_003506_070--Hb_001525_010 Hb_011909_060 Hb_011909_060 Hb_003506_070--Hb_011909_060 Hb_003506_070--Hb_004218_090 Hb_001141_360 Hb_001141_360 Hb_003120_050--Hb_001141_360 Hb_028207_040 Hb_028207_040 Hb_003120_050--Hb_028207_040 Hb_003494_060 Hb_003494_060 Hb_003120_050--Hb_003494_060 Hb_001865_060 Hb_001865_060 Hb_003120_050--Hb_001865_060 Hb_000084_240 Hb_000084_240 Hb_003120_050--Hb_000084_240 Hb_003078_030--Hb_000056_300 Hb_000186_200 Hb_000186_200 Hb_003078_030--Hb_000186_200 Hb_000163_230 Hb_000163_230 Hb_003078_030--Hb_000163_230 Hb_001009_090 Hb_001009_090 Hb_003078_030--Hb_001009_090 Hb_003078_030--Hb_000836_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.0653 119.067 38.418 23.7802 30.1387 26.4148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.4637 18.5042 15.1495 13.7299 11.4367

CAGE analysis