Hb_127599_010

Information

Type -
Description -
Location Contig127599: 1-888
Sequence    

Annotation

kegg
ID rcu:RCOM_1602810
description ATP-dependent RNA helicase, putative
nr
ID KDO71105.1
description hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
swissprot
ID Q38953
description Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2
trembl
ID A0A067FY88
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0010462mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description probable pre-mrna-splicing factor atp-dependent rna helicase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_127599_010 0.0 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
2 Hb_004218_090 0.0772548417 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_000062_080 0.0935141085 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
4 Hb_000169_170 0.0936943277 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
5 Hb_006738_050 0.0969110683 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
6 Hb_000700_060 0.1070148592 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
7 Hb_006683_040 0.1088712058 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
8 Hb_018301_010 0.1095032944 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
9 Hb_000802_190 0.1097485387 - - PREDICTED: peroxisomal (S)-2-hydroxy-acid oxidase [Jatropha curcas]
10 Hb_000363_370 0.1102273014 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
11 Hb_004195_120 0.1125218215 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
12 Hb_130389_010 0.1129422741 - - PREDICTED: la protein 1 [Jatropha curcas]
13 Hb_007894_130 0.1156942166 - - hypothetical protein RCOM_0584960 [Ricinus communis]
14 Hb_000061_490 0.1157276758 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
15 Hb_005203_020 0.1163661995 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
16 Hb_002119_090 0.1166328752 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
17 Hb_007054_040 0.1173912474 - - PREDICTED: protein RST1 [Jatropha curcas]
18 Hb_000123_350 0.1178036854 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
19 Hb_001865_060 0.1190861401 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
20 Hb_125126_010 0.1198491895 desease resistance Gene Name: NB-ARC resistance family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_127599_010 Hb_127599_010 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000062_080 Hb_000062_080 Hb_127599_010--Hb_000062_080 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_018301_010 Hb_018301_010 Hb_004218_090--Hb_018301_010 Hb_004218_090--Hb_006683_040 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_000061_490 Hb_000061_490 Hb_004218_090--Hb_000061_490 Hb_000120_420 Hb_000120_420 Hb_004218_090--Hb_000120_420 Hb_001865_060 Hb_001865_060 Hb_000062_080--Hb_001865_060 Hb_000448_060 Hb_000448_060 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_000010_350 Hb_000010_350 Hb_000062_080--Hb_000010_350 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_007054_040 Hb_007054_040 Hb_000169_170--Hb_007054_040 Hb_000009_330 Hb_000009_330 Hb_000169_170--Hb_000009_330 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_000862_040 Hb_000862_040 Hb_000169_170--Hb_000862_040 Hb_001862_110 Hb_001862_110 Hb_000169_170--Hb_001862_110 Hb_006738_050--Hb_000700_060 Hb_002119_090 Hb_002119_090 Hb_006738_050--Hb_002119_090 Hb_004410_070 Hb_004410_070 Hb_006738_050--Hb_004410_070 Hb_000205_240 Hb_000205_240 Hb_006738_050--Hb_000205_240 Hb_007017_070 Hb_007017_070 Hb_006738_050--Hb_007017_070 Hb_004899_040 Hb_004899_040 Hb_006738_050--Hb_004899_040 Hb_000700_060--Hb_002119_090 Hb_004785_030 Hb_004785_030 Hb_000700_060--Hb_004785_030 Hb_002284_170 Hb_002284_170 Hb_000700_060--Hb_002284_170 Hb_000700_060--Hb_004410_070 Hb_000059_020 Hb_000059_020 Hb_000700_060--Hb_000059_020 Hb_000932_070 Hb_000932_070 Hb_006683_040--Hb_000932_070 Hb_006683_040--Hb_018301_010 Hb_000340_110 Hb_000340_110 Hb_006683_040--Hb_000340_110 Hb_006683_040--Hb_000061_490 Hb_164010_070 Hb_164010_070 Hb_006683_040--Hb_164010_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.61801 6.44481 1.9114 1.57933 1.65207 1.60241
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11893 0.972547 0.845182 2.3167 0.657058

CAGE analysis