Hb_018301_010

Information

Type -
Description -
Location Contig18301: 2183-6599
Sequence    

Annotation

kegg
ID rcu:RCOM_1198000
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_012093027.1
description PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
swissprot
ID Q8GYA4
description Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3
trembl
ID A0A067J8T0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05906 PE=4 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at4g00960

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17861: 5134-6042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018301_010 0.0 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
2 Hb_006683_040 0.0714749103 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_004218_090 0.0749475666 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
4 Hb_012114_050 0.0849273996 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
5 Hb_000264_080 0.0924176739 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
6 Hb_000120_420 0.0932293836 - - PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
7 Hb_007193_110 0.09697769 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
8 Hb_000061_490 0.0976933687 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
9 Hb_000932_070 0.0987862286 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
10 Hb_011909_060 0.1017824423 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
11 Hb_000599_130 0.1028089315 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
12 Hb_004410_070 0.1053483048 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
13 Hb_009771_100 0.106489279 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
14 Hb_127599_010 0.1095032944 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
15 Hb_000034_160 0.1099074818 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
16 Hb_001141_370 0.110821921 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
17 Hb_000227_310 0.1108801514 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
18 Hb_006738_050 0.1123237782 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
19 Hb_178127_010 0.1127261652 - - Ubiquitin ligase SINAT3, putative [Ricinus communis]
20 Hb_000625_120 0.112791518 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]

Gene co-expression network

sample Hb_018301_010 Hb_018301_010 Hb_006683_040 Hb_006683_040 Hb_018301_010--Hb_006683_040 Hb_004218_090 Hb_004218_090 Hb_018301_010--Hb_004218_090 Hb_012114_050 Hb_012114_050 Hb_018301_010--Hb_012114_050 Hb_000264_080 Hb_000264_080 Hb_018301_010--Hb_000264_080 Hb_000120_420 Hb_000120_420 Hb_018301_010--Hb_000120_420 Hb_007193_110 Hb_007193_110 Hb_018301_010--Hb_007193_110 Hb_000932_070 Hb_000932_070 Hb_006683_040--Hb_000932_070 Hb_000340_110 Hb_000340_110 Hb_006683_040--Hb_000340_110 Hb_006683_040--Hb_004218_090 Hb_000061_490 Hb_000061_490 Hb_006683_040--Hb_000061_490 Hb_164010_070 Hb_164010_070 Hb_006683_040--Hb_164010_070 Hb_127599_010 Hb_127599_010 Hb_004218_090--Hb_127599_010 Hb_000465_080 Hb_000465_080 Hb_004218_090--Hb_000465_080 Hb_004218_090--Hb_000061_490 Hb_004218_090--Hb_000120_420 Hb_012114_050--Hb_007193_110 Hb_004410_070 Hb_004410_070 Hb_012114_050--Hb_004410_070 Hb_000556_170 Hb_000556_170 Hb_012114_050--Hb_000556_170 Hb_000625_120 Hb_000625_120 Hb_012114_050--Hb_000625_120 Hb_000094_320 Hb_000094_320 Hb_012114_050--Hb_000094_320 Hb_007576_220 Hb_007576_220 Hb_012114_050--Hb_007576_220 Hb_000926_010 Hb_000926_010 Hb_000264_080--Hb_000926_010 Hb_000264_080--Hb_000061_490 Hb_000227_310 Hb_000227_310 Hb_000264_080--Hb_000227_310 Hb_000264_080--Hb_004410_070 Hb_000336_110 Hb_000336_110 Hb_000264_080--Hb_000336_110 Hb_007017_070 Hb_007017_070 Hb_000264_080--Hb_007017_070 Hb_011909_060 Hb_011909_060 Hb_000120_420--Hb_011909_060 Hb_000363_280 Hb_000363_280 Hb_000120_420--Hb_000363_280 Hb_000120_420--Hb_000227_310 Hb_000120_420--Hb_000264_080 Hb_167381_020 Hb_167381_020 Hb_000120_420--Hb_167381_020 Hb_003430_030 Hb_003430_030 Hb_000120_420--Hb_003430_030 Hb_007193_110--Hb_004410_070 Hb_007193_110--Hb_007576_220 Hb_007193_110--Hb_000094_320 Hb_007193_110--Hb_000556_170 Hb_001021_200 Hb_001021_200 Hb_007193_110--Hb_001021_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.05931 21.4989 7.99993 4.71313 8.81492 8.00629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53529 2.74253 4.54148 7.09696 2.39804

CAGE analysis