Hb_007193_110

Information

Type -
Description -
Location Contig7193: 164027-173847
Sequence    

Annotation

kegg
ID tcc:TCM_016558
description NDR1/HIN1-like 8 isoform 2
nr
ID XP_012080774.1
description PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
swissprot
ID Q9JI90
description E3 ubiquitin-protein ligase RNF14 OS=Mus musculus GN=Rnf14 PE=2 SV=2
trembl
ID A0A067KER6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15543 PE=4 SV=1
Gene Ontology
ID GO:0003676
description e3 ubiquitin-protein ligase rnf14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55556: 164038-165131 , PASA_asmbl_55557: 170615-171721 , PASA_asmbl_55558: 172058-173556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007193_110 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
2 Hb_012114_050 0.044170359 - - PREDICTED: uncharacterized protein LOC105645815 isoform X1 [Jatropha curcas]
3 Hb_004410_070 0.0724270743 - - PREDICTED: protein LTV1 homolog [Jatropha curcas]
4 Hb_007576_220 0.0787991669 - - PREDICTED: kanadaptin [Jatropha curcas]
5 Hb_000094_320 0.0809097447 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
6 Hb_000556_170 0.0824919349 - - PREDICTED: uncharacterized protein LOC105643102 isoform X2 [Jatropha curcas]
7 Hb_001021_200 0.0838239908 desease resistance Gene Name: AAA PREDICTED: peroxisome biogenesis protein 6 [Jatropha curcas]
8 Hb_000347_120 0.0841009195 - - PREDICTED: uncharacterized protein LOC105631363 [Jatropha curcas]
9 Hb_007017_070 0.0843040498 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
10 Hb_001141_370 0.0843370896 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
11 Hb_000625_120 0.0845446932 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]
12 Hb_000926_010 0.0855173495 - - PREDICTED: uncharacterized protein LOC105632975 [Jatropha curcas]
13 Hb_000723_110 0.0858385821 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
14 Hb_000544_060 0.0860286882 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
15 Hb_002073_280 0.0869606181 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
16 Hb_009771_100 0.0894186173 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
17 Hb_002282_060 0.0894921652 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
18 Hb_000661_200 0.0920957515 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
19 Hb_000227_310 0.0936051284 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
20 Hb_004032_230 0.0940476546 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]

Gene co-expression network

sample Hb_007193_110 Hb_007193_110 Hb_012114_050 Hb_012114_050 Hb_007193_110--Hb_012114_050 Hb_004410_070 Hb_004410_070 Hb_007193_110--Hb_004410_070 Hb_007576_220 Hb_007576_220 Hb_007193_110--Hb_007576_220 Hb_000094_320 Hb_000094_320 Hb_007193_110--Hb_000094_320 Hb_000556_170 Hb_000556_170 Hb_007193_110--Hb_000556_170 Hb_001021_200 Hb_001021_200 Hb_007193_110--Hb_001021_200 Hb_012114_050--Hb_004410_070 Hb_012114_050--Hb_000556_170 Hb_000625_120 Hb_000625_120 Hb_012114_050--Hb_000625_120 Hb_012114_050--Hb_000094_320 Hb_012114_050--Hb_007576_220 Hb_007017_070 Hb_007017_070 Hb_004410_070--Hb_007017_070 Hb_000723_110 Hb_000723_110 Hb_004410_070--Hb_000723_110 Hb_002542_130 Hb_002542_130 Hb_004410_070--Hb_002542_130 Hb_000700_060 Hb_000700_060 Hb_004410_070--Hb_000700_060 Hb_010417_070 Hb_010417_070 Hb_004410_070--Hb_010417_070 Hb_000069_130 Hb_000069_130 Hb_004410_070--Hb_000069_130 Hb_009449_090 Hb_009449_090 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_000347_120 Hb_000347_120 Hb_000094_320--Hb_000347_120 Hb_004371_010 Hb_004371_010 Hb_000094_320--Hb_004371_010 Hb_000526_060 Hb_000526_060 Hb_000094_320--Hb_000526_060 Hb_000094_320--Hb_004410_070 Hb_000640_310 Hb_000640_310 Hb_000556_170--Hb_000640_310 Hb_000236_470 Hb_000236_470 Hb_000556_170--Hb_000236_470 Hb_003633_070 Hb_003633_070 Hb_000556_170--Hb_003633_070 Hb_001799_050 Hb_001799_050 Hb_000556_170--Hb_001799_050 Hb_140049_040 Hb_140049_040 Hb_000556_170--Hb_140049_040 Hb_004480_040 Hb_004480_040 Hb_000556_170--Hb_004480_040 Hb_000577_030 Hb_000577_030 Hb_001021_200--Hb_000577_030 Hb_000230_090 Hb_000230_090 Hb_001021_200--Hb_000230_090 Hb_002022_070 Hb_002022_070 Hb_001021_200--Hb_002022_070 Hb_005104_010 Hb_005104_010 Hb_001021_200--Hb_005104_010 Hb_000917_160 Hb_000917_160 Hb_001021_200--Hb_000917_160 Hb_001021_200--Hb_000236_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.22205 20.7216 10.455 4.71977 12.1013 8.09504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0746 4.00776 6.07884 6.58803 5.72516

CAGE analysis