Hb_002073_280

Information

Type -
Description -
Location Contig2073: 210181-230050
Sequence    

Annotation

kegg
ID rcu:RCOM_0699240
description Phospholipid-transporting ATPase, putative (EC:3.6.3.1)
nr
ID XP_012091990.1
description PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
swissprot
ID Q9XIE6
description Phospholipid-transporting ATPase 3 OS=Arabidopsis thaliana GN=ALA3 PE=1 SV=2
trembl
ID A0A067JBW1
description Phospholipid-transporting ATPase OS=Jatropha curcas GN=JCGZ_21733 PE=3 SV=1
Gene Ontology
ID GO:0000139
description phospholipid-transporting atpase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21397: 210174-230039
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_280 0.0 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
2 Hb_002282_060 0.063624024 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
3 Hb_013749_020 0.0716344544 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
4 Hb_007576_220 0.0747689371 - - PREDICTED: kanadaptin [Jatropha curcas]
5 Hb_155159_010 0.0757101025 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
6 Hb_000526_060 0.0827081165 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
7 Hb_000896_060 0.0852991336 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_007813_030 0.0864488314 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At4g19050 [Jatropha curcas]
9 Hb_007193_110 0.0869606181 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
10 Hb_000086_050 0.0879414566 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
11 Hb_001454_220 0.0892014164 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
12 Hb_000227_310 0.0900361114 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
13 Hb_007818_030 0.0908931607 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
14 Hb_009449_090 0.0914012677 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
15 Hb_004032_230 0.0924478061 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
16 Hb_000661_200 0.0924612655 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
17 Hb_000574_510 0.092558539 - - protein kinase, putative [Ricinus communis]
18 Hb_000218_020 0.0937786304 - - synaptosomal associated protein, putative [Ricinus communis]
19 Hb_007017_070 0.0937975407 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
20 Hb_002902_020 0.0938514856 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]

Gene co-expression network

sample Hb_002073_280 Hb_002073_280 Hb_002282_060 Hb_002282_060 Hb_002073_280--Hb_002282_060 Hb_013749_020 Hb_013749_020 Hb_002073_280--Hb_013749_020 Hb_007576_220 Hb_007576_220 Hb_002073_280--Hb_007576_220 Hb_155159_010 Hb_155159_010 Hb_002073_280--Hb_155159_010 Hb_000526_060 Hb_000526_060 Hb_002073_280--Hb_000526_060 Hb_000896_060 Hb_000896_060 Hb_002073_280--Hb_000896_060 Hb_002282_060--Hb_155159_010 Hb_001231_090 Hb_001231_090 Hb_002282_060--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_002282_060--Hb_010661_020 Hb_002542_130 Hb_002542_130 Hb_002282_060--Hb_002542_130 Hb_000703_130 Hb_000703_130 Hb_002282_060--Hb_000703_130 Hb_000422_110 Hb_000422_110 Hb_013749_020--Hb_000422_110 Hb_000544_060 Hb_000544_060 Hb_013749_020--Hb_000544_060 Hb_118840_050 Hb_118840_050 Hb_013749_020--Hb_118840_050 Hb_008406_040 Hb_008406_040 Hb_013749_020--Hb_008406_040 Hb_000661_200 Hb_000661_200 Hb_013749_020--Hb_000661_200 Hb_009449_090 Hb_009449_090 Hb_007576_220--Hb_009449_090 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_007576_220--Hb_155159_010 Hb_005539_040 Hb_005539_040 Hb_007576_220--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_007576_220--Hb_000086_050 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_155159_010--Hb_000703_130 Hb_155159_010--Hb_001231_090 Hb_155159_010--Hb_010661_020 Hb_000526_060--Hb_000896_060 Hb_000117_070 Hb_000117_070 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_000526_060--Hb_155159_010 Hb_000526_060--Hb_000703_130 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000896_060--Hb_000117_070 Hb_044653_020 Hb_044653_020 Hb_000896_060--Hb_044653_020 Hb_012368_100 Hb_012368_100 Hb_000896_060--Hb_012368_100 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8432 34.489 16.7552 9.66456 20.3046 15.7489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.33619 4.05862 5.95161 10.4411 11.737

CAGE analysis