Hb_000932_070

Information

Type -
Description -
Location Contig932: 89384-98379
Sequence    

Annotation

kegg
ID rcu:RCOM_0212760
description asparagine synthetase, putative (EC:6.3.5.4)
nr
ID XP_012090631.1
description PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
swissprot
ID Q9LFU1
description Asparagine synthetase [glutamine-hydrolyzing] 3 OS=Arabidopsis thaliana GN=ASN3 PE=2 SV=1
trembl
ID A0A067LEE2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24045 PE=4 SV=1
Gene Ontology
ID GO:0004066
description asparagine synthetase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62863: 89386-98428 , PASA_asmbl_62864: 96081-96405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000932_070 0.0 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
2 Hb_006683_040 0.0655503548 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
3 Hb_007894_130 0.0983963182 - - hypothetical protein RCOM_0584960 [Ricinus communis]
4 Hb_000340_110 0.0987393891 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
5 Hb_018301_010 0.0987862286 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
6 Hb_001511_110 0.1051926125 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
7 Hb_157966_010 0.1072690822 - - hypothetical protein JCGZ_13877 [Jatropha curcas]
8 Hb_000236_220 0.1075222246 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
9 Hb_164010_070 0.1075871768 - - Paramyosin, putative [Ricinus communis]
10 Hb_001055_030 0.1079963789 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
11 Hb_001141_370 0.1082086733 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
12 Hb_093084_070 0.1117029212 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
13 Hb_000599_130 0.1131218867 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
14 Hb_012799_120 0.1131861862 - - PREDICTED: DNA mismatch repair protein MSH3 isoform X1 [Jatropha curcas]
15 Hb_004032_180 0.1139928632 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
16 Hb_000622_250 0.1142926215 - - atpob1, putative [Ricinus communis]
17 Hb_000034_160 0.11600986 - - hypothetical protein EUGRSUZ_F02151 [Eucalyptus grandis]
18 Hb_000544_060 0.1160576224 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
19 Hb_004218_090 0.1172724144 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000061_490 0.1179144482 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_000932_070 Hb_000932_070 Hb_006683_040 Hb_006683_040 Hb_000932_070--Hb_006683_040 Hb_007894_130 Hb_007894_130 Hb_000932_070--Hb_007894_130 Hb_000340_110 Hb_000340_110 Hb_000932_070--Hb_000340_110 Hb_018301_010 Hb_018301_010 Hb_000932_070--Hb_018301_010 Hb_001511_110 Hb_001511_110 Hb_000932_070--Hb_001511_110 Hb_157966_010 Hb_157966_010 Hb_000932_070--Hb_157966_010 Hb_006683_040--Hb_018301_010 Hb_006683_040--Hb_000340_110 Hb_004218_090 Hb_004218_090 Hb_006683_040--Hb_004218_090 Hb_000061_490 Hb_000061_490 Hb_006683_040--Hb_000061_490 Hb_164010_070 Hb_164010_070 Hb_006683_040--Hb_164010_070 Hb_001055_030 Hb_001055_030 Hb_007894_130--Hb_001055_030 Hb_007894_130--Hb_000061_490 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_029223_050 Hb_029223_050 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_018301_010--Hb_004218_090 Hb_012114_050 Hb_012114_050 Hb_018301_010--Hb_012114_050 Hb_000264_080 Hb_000264_080 Hb_018301_010--Hb_000264_080 Hb_000120_420 Hb_000120_420 Hb_018301_010--Hb_000120_420 Hb_007193_110 Hb_007193_110 Hb_018301_010--Hb_007193_110 Hb_001511_110--Hb_029223_050 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_004659_080 Hb_004659_080 Hb_157966_010--Hb_004659_080 Hb_000622_250 Hb_000622_250 Hb_157966_010--Hb_000622_250 Hb_018133_050 Hb_018133_050 Hb_157966_010--Hb_018133_050 Hb_006663_040 Hb_006663_040 Hb_157966_010--Hb_006663_040 Hb_000120_660 Hb_000120_660 Hb_157966_010--Hb_000120_660 Hb_007676_100 Hb_007676_100 Hb_157966_010--Hb_007676_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.7586 175.732 37.8165 40.7999 75.1573 90.7274
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0545 18.8771 37.4785 76.3748 20.248

CAGE analysis