Hb_144824_010

Information

Type -
Description -
Location Contig144824: 53-4892
Sequence    

Annotation

kegg
ID pop:POPTR_0019s02110g
description hypothetical protein
nr
ID XP_006370954.1
description hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
swissprot
ID O64790
description Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2
trembl
ID U5FFW6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s02110g PE=4 SV=1
Gene Ontology
ID GO:0032550
description low quality protein: probable disease resistance protein at4g27220

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11677: 3216-5127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144824_010 0.0 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
2 Hb_000832_320 0.0820849749 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
3 Hb_000340_110 0.0891206621 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
4 Hb_001511_110 0.0959728031 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
5 Hb_005946_170 0.1005744564 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
6 Hb_029223_050 0.1016068896 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
7 Hb_164010_070 0.104346011 - - Paramyosin, putative [Ricinus communis]
8 Hb_001053_030 0.1065204336 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_000243_380 0.1089742443 - - PREDICTED: histone H1 [Jatropha curcas]
10 Hb_000304_050 0.109518314 transcription factor TF Family: GRAS PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
11 Hb_026198_040 0.1104020416 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
12 Hb_006185_020 0.1109800048 - - PREDICTED: midasin [Jatropha curcas]
13 Hb_009028_030 0.1119662557 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
14 Hb_001504_190 0.112115583 - - double-stranded RNA binding protein, putative [Ricinus communis]
15 Hb_002477_150 0.1124030522 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
16 Hb_004480_040 0.1130623016 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
17 Hb_124677_060 0.1137494538 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
18 Hb_003206_030 0.1156506284 - - PREDICTED: uncharacterized protein LOC105632652 [Jatropha curcas]
19 Hb_000959_040 0.1170794919 - - PREDICTED: uncharacterized protein LOC105636570 [Jatropha curcas]
20 Hb_002813_010 0.1184959079 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_144824_010 Hb_144824_010 Hb_000832_320 Hb_000832_320 Hb_144824_010--Hb_000832_320 Hb_000340_110 Hb_000340_110 Hb_144824_010--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_144824_010--Hb_001511_110 Hb_005946_170 Hb_005946_170 Hb_144824_010--Hb_005946_170 Hb_029223_050 Hb_029223_050 Hb_144824_010--Hb_029223_050 Hb_164010_070 Hb_164010_070 Hb_144824_010--Hb_164010_070 Hb_006663_040 Hb_006663_040 Hb_000832_320--Hb_006663_040 Hb_018133_050 Hb_018133_050 Hb_000832_320--Hb_018133_050 Hb_004480_040 Hb_004480_040 Hb_000832_320--Hb_004480_040 Hb_052764_060 Hb_052764_060 Hb_000832_320--Hb_052764_060 Hb_000544_060 Hb_000544_060 Hb_000832_320--Hb_000544_060 Hb_000959_040 Hb_000959_040 Hb_000832_320--Hb_000959_040 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_001511_110 Hb_000340_110--Hb_000544_060 Hb_026198_040 Hb_026198_040 Hb_000340_110--Hb_026198_040 Hb_001511_110--Hb_029223_050 Hb_001511_110--Hb_001141_370 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_002813_010 Hb_002813_010 Hb_005946_170--Hb_002813_010 Hb_002477_150 Hb_002477_150 Hb_005946_170--Hb_002477_150 Hb_001059_100 Hb_001059_100 Hb_005946_170--Hb_001059_100 Hb_148209_020 Hb_148209_020 Hb_005946_170--Hb_148209_020 Hb_000813_100 Hb_000813_100 Hb_005946_170--Hb_000813_100 Hb_004543_030 Hb_004543_030 Hb_005946_170--Hb_004543_030 Hb_029223_050--Hb_026198_040 Hb_029223_050--Hb_001141_370 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_164010_070--Hb_000340_110 Hb_124677_060 Hb_124677_060 Hb_164010_070--Hb_124677_060 Hb_006683_040 Hb_006683_040 Hb_164010_070--Hb_006683_040 Hb_001053_030 Hb_001053_030 Hb_164010_070--Hb_001053_030 Hb_000932_070 Hb_000932_070 Hb_164010_070--Hb_000932_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.2895 76.5429 9.0076 7.17306 44.7528 35.8971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6211 14.8056 15.4006 24.072 14.7205

CAGE analysis