Hb_029223_050

Information

Type -
Description -
Location Contig29223: 17731-25455
Sequence    

Annotation

kegg
ID rcu:RCOM_1354150
description hypothetical protein
nr
ID XP_012082428.1
description PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ48
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16556 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30643: 17814-21246 , PASA_asmbl_30644: 17812-18623 , PASA_asmbl_30645: 22142-24349
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029223_050 0.0 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
2 Hb_000340_110 0.069707 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
3 Hb_001511_110 0.0777766166 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
4 Hb_026198_040 0.0797483918 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
5 Hb_001141_370 0.0868392712 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
6 Hb_000544_060 0.0916020848 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
7 Hb_104265_030 0.0943061467 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
8 Hb_000832_320 0.0949315629 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
9 Hb_000243_380 0.0952326742 - - PREDICTED: histone H1 [Jatropha curcas]
10 Hb_012226_010 0.1009690054 - - PREDICTED: protein DGCR14 [Jatropha curcas]
11 Hb_144824_010 0.1016068896 - - hypothetical protein POPTR_0019s02110g [Populus trichocarpa]
12 Hb_000094_320 0.1046768509 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
13 Hb_004371_010 0.10680573 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
14 Hb_052764_060 0.1087704952 - - XPA-binding protein, putative [Ricinus communis]
15 Hb_004480_040 0.115428361 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
16 Hb_000260_640 0.116399119 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
17 Hb_009771_100 0.1165817072 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
18 Hb_007193_110 0.117185635 - - PREDICTED: E3 ubiquitin-protein ligase RNF14 [Jatropha curcas]
19 Hb_000661_200 0.1184673491 - - PREDICTED: uncharacterized protein LOC105648311 isoform X1 [Jatropha curcas]
20 Hb_001902_060 0.1189847043 - - PREDICTED: U-box domain-containing protein 32 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_029223_050 Hb_029223_050 Hb_000340_110 Hb_000340_110 Hb_029223_050--Hb_000340_110 Hb_001511_110 Hb_001511_110 Hb_029223_050--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_029223_050--Hb_026198_040 Hb_001141_370 Hb_001141_370 Hb_029223_050--Hb_001141_370 Hb_000544_060 Hb_000544_060 Hb_029223_050--Hb_000544_060 Hb_104265_030 Hb_104265_030 Hb_029223_050--Hb_104265_030 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_001511_110 Hb_000340_110--Hb_000544_060 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_026198_040--Hb_001141_370 Hb_026198_040--Hb_000544_060 Hb_030827_060 Hb_030827_060 Hb_026198_040--Hb_030827_060 Hb_026198_040--Hb_000832_320 Hb_001141_370--Hb_000544_060 Hb_000236_220 Hb_000236_220 Hb_001141_370--Hb_000236_220 Hb_001243_060 Hb_001243_060 Hb_001141_370--Hb_001243_060 Hb_009771_100 Hb_009771_100 Hb_001141_370--Hb_009771_100 Hb_003858_090 Hb_003858_090 Hb_001141_370--Hb_003858_090 Hb_000661_200 Hb_000661_200 Hb_000544_060--Hb_000661_200 Hb_052764_060 Hb_052764_060 Hb_000544_060--Hb_052764_060 Hb_006663_040 Hb_006663_040 Hb_000544_060--Hb_006663_040 Hb_001902_060 Hb_001902_060 Hb_000544_060--Hb_001902_060 Hb_000544_060--Hb_000832_320 Hb_003125_030 Hb_003125_030 Hb_104265_030--Hb_003125_030 Hb_000123_350 Hb_000123_350 Hb_104265_030--Hb_000123_350 Hb_012226_010 Hb_012226_010 Hb_104265_030--Hb_012226_010 Hb_104265_030--Hb_026198_040 Hb_000896_060 Hb_000896_060 Hb_104265_030--Hb_000896_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.0652 34.2047 6.47665 5.33865 17.5563 10.4691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.46398 7.4867 5.88019 7.11041 7.40598

CAGE analysis