Hb_012226_010

Information

Type -
Description -
Location Contig12226: 20661-24575
Sequence    

Annotation

kegg
ID rcu:RCOM_1120390
description protein with unknown function
nr
ID XP_012081424.1
description PREDICTED: protein DGCR14 [Jatropha curcas]
swissprot
ID O44424
description Protein DGCR14 homolog OS=Drosophila melanogaster GN=Es2 PE=1 SV=2
trembl
ID A0A067K4C7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18467 PE=4 SV=1
Gene Ontology
ID GO:0042732
description protein dgcr14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012226_010 0.0 - - PREDICTED: protein DGCR14 [Jatropha curcas]
2 Hb_000340_110 0.0968362561 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X1 [Jatropha curcas]
3 Hb_003125_030 0.1006008977 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
4 Hb_029223_050 0.1009690054 - - PREDICTED: uncharacterized protein LOC105642267 isoform X1 [Jatropha curcas]
5 Hb_104265_030 0.1043345681 - - hypothetical protein POPTR_0001s31230g [Populus trichocarpa]
6 Hb_001511_110 0.1064153659 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
7 Hb_026198_040 0.1083962488 - - PREDICTED: uncharacterized protein LOC105628901 [Jatropha curcas]
8 Hb_000540_120 0.1098187254 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
9 Hb_046117_010 0.1113537398 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 3 [Jatropha curcas]
10 Hb_000465_080 0.1168041782 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
11 Hb_004218_090 0.1168395321 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_001141_360 0.1212762181 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
13 Hb_000243_380 0.121902976 - - PREDICTED: histone H1 [Jatropha curcas]
14 Hb_000123_350 0.1227624624 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
15 Hb_006683_040 0.1256251388 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
16 Hb_001638_040 0.1262383831 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
17 Hb_003506_070 0.1337281622 - - PREDICTED: calcineurin B-like protein 7 isoform X2 [Jatropha curcas]
18 Hb_001141_370 0.1338327793 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
19 Hb_000061_490 0.136156529 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
20 Hb_001189_130 0.1372064138 transcription factor TF Family: NAC PREDICTED: protein ATAF2-like [Jatropha curcas]

Gene co-expression network

sample Hb_012226_010 Hb_012226_010 Hb_000340_110 Hb_000340_110 Hb_012226_010--Hb_000340_110 Hb_003125_030 Hb_003125_030 Hb_012226_010--Hb_003125_030 Hb_029223_050 Hb_029223_050 Hb_012226_010--Hb_029223_050 Hb_104265_030 Hb_104265_030 Hb_012226_010--Hb_104265_030 Hb_001511_110 Hb_001511_110 Hb_012226_010--Hb_001511_110 Hb_026198_040 Hb_026198_040 Hb_012226_010--Hb_026198_040 Hb_000340_110--Hb_029223_050 Hb_001141_370 Hb_001141_370 Hb_000340_110--Hb_001141_370 Hb_000340_110--Hb_001511_110 Hb_000544_060 Hb_000544_060 Hb_000340_110--Hb_000544_060 Hb_000340_110--Hb_026198_040 Hb_144824_010 Hb_144824_010 Hb_000340_110--Hb_144824_010 Hb_003125_030--Hb_104265_030 Hb_003506_070 Hb_003506_070 Hb_003125_030--Hb_003506_070 Hb_000540_120 Hb_000540_120 Hb_003125_030--Hb_000540_120 Hb_001525_010 Hb_001525_010 Hb_003125_030--Hb_001525_010 Hb_000327_280 Hb_000327_280 Hb_003125_030--Hb_000327_280 Hb_029223_050--Hb_001511_110 Hb_029223_050--Hb_026198_040 Hb_029223_050--Hb_001141_370 Hb_029223_050--Hb_000544_060 Hb_029223_050--Hb_104265_030 Hb_000123_350 Hb_000123_350 Hb_104265_030--Hb_000123_350 Hb_104265_030--Hb_026198_040 Hb_000896_060 Hb_000896_060 Hb_104265_030--Hb_000896_060 Hb_001511_110--Hb_001141_370 Hb_000832_320 Hb_000832_320 Hb_001511_110--Hb_000832_320 Hb_000243_380 Hb_000243_380 Hb_001511_110--Hb_000243_380 Hb_004371_010 Hb_004371_010 Hb_001511_110--Hb_004371_010 Hb_026198_040--Hb_001141_370 Hb_026198_040--Hb_000544_060 Hb_030827_060 Hb_030827_060 Hb_026198_040--Hb_030827_060 Hb_026198_040--Hb_000832_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8215 83.5387 11.0752 14.091 26.6443 24.3194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8739 11.2404 8.65367 11.8579 8.07054

CAGE analysis