Hb_028207_040

Information

Type -
Description -
Location Contig28207: 14385-17703
Sequence    

Annotation

kegg
ID rcu:RCOM_0507720
description beta-hexosaminidase, putative (EC:3.2.1.52)
nr
ID XP_012092580.1
description PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
swissprot
ID Q9SYK0
description Beta-hexosaminidase 2 OS=Arabidopsis thaliana GN=HEXO2 PE=1 SV=1
trembl
ID A0A067J9D2
description Beta-hexosaminidase OS=Jatropha curcas GN=JCGZ_05249 PE=3 SV=1
Gene Ontology
ID GO:0004563
description beta-hexosaminidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29558: 14385-17479
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028207_040 0.0 - - PREDICTED: beta-hexosaminidase 2 [Jatropha curcas]
2 Hb_000953_050 0.1000890847 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
3 Hb_001525_010 0.1056652864 - - PREDICTED: uncharacterized protein LOC105638298 [Jatropha curcas]
4 Hb_003078_050 0.1170458485 - - PREDICTED: serine/threonine-protein kinase OXI1 [Jatropha curcas]
5 Hb_003120_050 0.1193170741 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
6 Hb_001369_570 0.1198966381 - - hypothetical protein JCGZ_26236 [Jatropha curcas]
7 Hb_000069_230 0.1213282224 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH13-like [Jatropha curcas]
8 Hb_000483_040 0.1235621276 - - Cell division protein ftsH, putative [Ricinus communis]
9 Hb_003097_100 0.1259461625 - - probable glycerol-3-phosphate dehydrogenase [NAD(+)] 1, cytosolic [Jatropha curcas]
10 Hb_005496_180 0.1339120615 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
11 Hb_003055_140 0.1391494931 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
12 Hb_000634_070 0.1428273355 - - PREDICTED: probable receptor-like protein kinase At5g47070 [Jatropha curcas]
13 Hb_010921_030 0.1434740418 transcription factor TF Family: PHD PREDICTED: PHD finger protein At2g01810 [Jatropha curcas]
14 Hb_001437_010 0.1459090532 - - PREDICTED: probable receptor-like protein kinase At1g33260 [Jatropha curcas]
15 Hb_000460_060 0.1465549477 - - importin beta-1, putative [Ricinus communis]
16 Hb_003411_030 0.1470734735 - - hypothetical protein POPTR_0010s13590g [Populus trichocarpa]
17 Hb_003494_060 0.1516609168 - - PREDICTED: uncharacterized protein LOC105644062 isoform X1 [Jatropha curcas]
18 Hb_001629_060 0.1519225627 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
19 Hb_000465_080 0.1558852783 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
20 Hb_012107_010 0.1565171919 - - hypothetical protein JCGZ_19531 [Jatropha curcas]

Gene co-expression network

sample Hb_028207_040 Hb_028207_040 Hb_000953_050 Hb_000953_050 Hb_028207_040--Hb_000953_050 Hb_001525_010 Hb_001525_010 Hb_028207_040--Hb_001525_010 Hb_003078_050 Hb_003078_050 Hb_028207_040--Hb_003078_050 Hb_003120_050 Hb_003120_050 Hb_028207_040--Hb_003120_050 Hb_001369_570 Hb_001369_570 Hb_028207_040--Hb_001369_570 Hb_000069_230 Hb_000069_230 Hb_028207_040--Hb_000069_230 Hb_005496_180 Hb_005496_180 Hb_000953_050--Hb_005496_180 Hb_003055_140 Hb_003055_140 Hb_000953_050--Hb_003055_140 Hb_002572_050 Hb_002572_050 Hb_000953_050--Hb_002572_050 Hb_009028_010 Hb_009028_010 Hb_000953_050--Hb_009028_010 Hb_001629_060 Hb_001629_060 Hb_000953_050--Hb_001629_060 Hb_003506_070 Hb_003506_070 Hb_001525_010--Hb_003506_070 Hb_003125_030 Hb_003125_030 Hb_001525_010--Hb_003125_030 Hb_001525_010--Hb_000953_050 Hb_000540_110 Hb_000540_110 Hb_001525_010--Hb_000540_110 Hb_116086_010 Hb_116086_010 Hb_001525_010--Hb_116086_010 Hb_000634_070 Hb_000634_070 Hb_003078_050--Hb_000634_070 Hb_003078_050--Hb_000069_230 Hb_003097_100 Hb_003097_100 Hb_003078_050--Hb_003097_100 Hb_000258_380 Hb_000258_380 Hb_003078_050--Hb_000258_380 Hb_001205_030 Hb_001205_030 Hb_003078_050--Hb_001205_030 Hb_000465_080 Hb_000465_080 Hb_003120_050--Hb_000465_080 Hb_001141_360 Hb_001141_360 Hb_003120_050--Hb_001141_360 Hb_003494_060 Hb_003494_060 Hb_003120_050--Hb_003494_060 Hb_001865_060 Hb_001865_060 Hb_003120_050--Hb_001865_060 Hb_000084_240 Hb_000084_240 Hb_003120_050--Hb_000084_240 Hb_001369_570--Hb_002572_050 Hb_001369_570--Hb_000953_050 Hb_001369_570--Hb_005496_180 Hb_001794_060 Hb_001794_060 Hb_001369_570--Hb_001794_060 Hb_001369_570--Hb_001525_010 Hb_000069_230--Hb_003097_100 Hb_000069_230--Hb_000634_070 Hb_004597_010 Hb_004597_010 Hb_000069_230--Hb_004597_010 Hb_000069_230--Hb_001525_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.4391 84.441 15.127 16.2655 14.365 11.2152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8973 14.4737 20.9927 6.11124 15.9609

CAGE analysis