Hb_001629_060

Information

Type transcription factor
Description TF Family: SWI/SNF-SWI3
Location Contig1629: 45101-48140
Sequence    

Annotation

kegg
ID rcu:RCOM_0380570
description Flavin-containing amine oxidase domain-containing protein, putative (EC:1.4.3.2)
nr
ID XP_002533711.1
description Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9LID0
description Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1
trembl
ID B9T642
description Flavin-containing amine oxidase domain-containing protein, putative OS=Ricinus communis GN=RCOM_0380570 PE=4 SV=1
Gene Ontology
ID GO:0001716
description lysine-specific histone demethylase 1 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14781: 44745-45031 , PASA_asmbl_14783: 45676-46853 , PASA_asmbl_14784: 46891-48405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001629_060 0.0 transcription factor TF Family: SWI/SNF-SWI3 Flavin-containing amine oxidase domain-containing protein, putative [Ricinus communis]
2 Hb_002007_160 0.0837835571 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
3 Hb_006117_080 0.08807738 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
4 Hb_000442_010 0.0881063416 - - hypothetical protein POPTR_0010s19060g [Populus trichocarpa]
5 Hb_000479_070 0.0905662528 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
6 Hb_009150_020 0.0918453434 - - PREDICTED: uncharacterized protein LOC105630583 [Jatropha curcas]
7 Hb_000015_170 0.0948603444 - - conserved hypothetical protein [Ricinus communis]
8 Hb_143766_060 0.0962750797 - - PREDICTED: F-box/LRR-repeat protein At4g29420 [Jatropha curcas]
9 Hb_001545_150 0.0967573429 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
10 Hb_002783_040 0.0978414651 transcription factor TF Family: IWS1 -
11 Hb_002798_070 0.0991826423 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
12 Hb_000069_470 0.099842679 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
13 Hb_003055_140 0.1007796279 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
14 Hb_001488_180 0.1009257104 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
15 Hb_000866_120 0.1011245134 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
16 Hb_029142_050 0.101290882 desease resistance Gene Name: PPR PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
17 Hb_002780_010 0.1017737937 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
18 Hb_001104_190 0.1024501206 - - PREDICTED: uncharacterized protein LOC105629451 [Jatropha curcas]
19 Hb_000720_150 0.1027348513 - - PREDICTED: uncharacterized protein LOC105645849 isoform X3 [Jatropha curcas]
20 Hb_002263_040 0.1028948246 - - carbon catabolite repressor protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001629_060 Hb_001629_060 Hb_002007_160 Hb_002007_160 Hb_001629_060--Hb_002007_160 Hb_006117_080 Hb_006117_080 Hb_001629_060--Hb_006117_080 Hb_000442_010 Hb_000442_010 Hb_001629_060--Hb_000442_010 Hb_000479_070 Hb_000479_070 Hb_001629_060--Hb_000479_070 Hb_009150_020 Hb_009150_020 Hb_001629_060--Hb_009150_020 Hb_000015_170 Hb_000015_170 Hb_001629_060--Hb_000015_170 Hb_000866_120 Hb_000866_120 Hb_002007_160--Hb_000866_120 Hb_000599_190 Hb_000599_190 Hb_002007_160--Hb_000599_190 Hb_029142_050 Hb_029142_050 Hb_002007_160--Hb_029142_050 Hb_002780_010 Hb_002780_010 Hb_002007_160--Hb_002780_010 Hb_010222_070 Hb_010222_070 Hb_002007_160--Hb_010222_070 Hb_002798_070 Hb_002798_070 Hb_002007_160--Hb_002798_070 Hb_001104_190 Hb_001104_190 Hb_006117_080--Hb_001104_190 Hb_000069_470 Hb_000069_470 Hb_006117_080--Hb_000069_470 Hb_006117_080--Hb_009150_020 Hb_000321_150 Hb_000321_150 Hb_006117_080--Hb_000321_150 Hb_024185_010 Hb_024185_010 Hb_006117_080--Hb_024185_010 Hb_000260_640 Hb_000260_640 Hb_006117_080--Hb_000260_640 Hb_000442_010--Hb_002798_070 Hb_002263_040 Hb_002263_040 Hb_000442_010--Hb_002263_040 Hb_001104_170 Hb_001104_170 Hb_000442_010--Hb_001104_170 Hb_005725_210 Hb_005725_210 Hb_000442_010--Hb_005725_210 Hb_005389_160 Hb_005389_160 Hb_000442_010--Hb_005389_160 Hb_000243_250 Hb_000243_250 Hb_000442_010--Hb_000243_250 Hb_001473_110 Hb_001473_110 Hb_000479_070--Hb_001473_110 Hb_001545_150 Hb_001545_150 Hb_000479_070--Hb_001545_150 Hb_003918_030 Hb_003918_030 Hb_000479_070--Hb_003918_030 Hb_031042_050 Hb_031042_050 Hb_000479_070--Hb_031042_050 Hb_001279_120 Hb_001279_120 Hb_000479_070--Hb_001279_120 Hb_001488_180 Hb_001488_180 Hb_000479_070--Hb_001488_180 Hb_009150_020--Hb_001279_120 Hb_002783_040 Hb_002783_040 Hb_009150_020--Hb_002783_040 Hb_003470_080 Hb_003470_080 Hb_009150_020--Hb_003470_080 Hb_009150_020--Hb_002798_070 Hb_009150_020--Hb_000069_470 Hb_000120_130 Hb_000120_130 Hb_000015_170--Hb_000120_130 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_006275_020 Hb_006275_020 Hb_000015_170--Hb_006275_020 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000061_030 Hb_000061_030 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63849 13.5525 3.42984 4.81346 3.99591 3.98386
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53376 4.22369 6.38357 3.7021 6.11333

CAGE analysis