Hb_000120_130

Information

Type transcription factor
Description TF Family: C3H
Location Contig120: 83075-85180
Sequence    

Annotation

kegg
ID rcu:RCOM_0612590
description transcription factor, putative
nr
ID XP_012067418.1
description PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
swissprot
ID Q9LUZ4
description Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1
trembl
ID A0A067LPM4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08456 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 66 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06062: 82346-85621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_130 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
2 Hb_006275_020 0.0618905826 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
3 Hb_000015_170 0.0636219887 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000861_080 0.0708005363 - - PREDICTED: protein ELC-like [Jatropha curcas]
5 Hb_000808_030 0.0740603613 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
6 Hb_003747_100 0.0755341692 - - PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Jatropha curcas]
7 Hb_002783_040 0.0762708312 transcription factor TF Family: IWS1 -
8 Hb_000331_680 0.0782139014 - - Protein bem46, putative [Ricinus communis]
9 Hb_030827_020 0.0802097288 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
10 Hb_000069_310 0.0811275489 - - ubiquitin ligase [Cucumis melo subsp. melo]
11 Hb_001473_110 0.0819077847 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
12 Hb_001089_050 0.0824051616 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
13 Hb_000866_460 0.0824074383 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]
14 Hb_005653_090 0.0829693812 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
15 Hb_001635_120 0.0831295746 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
16 Hb_000340_420 0.0835242358 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
17 Hb_000061_240 0.0838010888 - - kinase, putative [Ricinus communis]
18 Hb_001716_020 0.0842310494 - - hydrolase, putative [Ricinus communis]
19 Hb_005489_020 0.0855694085 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001500_060 0.0856255487 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]

Gene co-expression network

sample Hb_000120_130 Hb_000120_130 Hb_006275_020 Hb_006275_020 Hb_000120_130--Hb_006275_020 Hb_000015_170 Hb_000015_170 Hb_000120_130--Hb_000015_170 Hb_000861_080 Hb_000861_080 Hb_000120_130--Hb_000861_080 Hb_000808_030 Hb_000808_030 Hb_000120_130--Hb_000808_030 Hb_003747_100 Hb_003747_100 Hb_000120_130--Hb_003747_100 Hb_002783_040 Hb_002783_040 Hb_000120_130--Hb_002783_040 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_006275_020--Hb_000015_170 Hb_000103_340 Hb_000103_340 Hb_006275_020--Hb_000103_340 Hb_000061_030 Hb_000061_030 Hb_006275_020--Hb_000061_030 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730 Hb_001089_050 Hb_001089_050 Hb_000861_080--Hb_001089_050 Hb_000803_070 Hb_000803_070 Hb_000861_080--Hb_000803_070 Hb_003398_080 Hb_003398_080 Hb_000861_080--Hb_003398_080 Hb_001195_530 Hb_001195_530 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_020831_030 Hb_020831_030 Hb_000861_080--Hb_020831_030 Hb_000808_030--Hb_003747_100 Hb_001004_060 Hb_001004_060 Hb_000808_030--Hb_001004_060 Hb_000964_130 Hb_000964_130 Hb_000808_030--Hb_000964_130 Hb_011671_410 Hb_011671_410 Hb_000808_030--Hb_011671_410 Hb_001999_290 Hb_001999_290 Hb_000808_030--Hb_001999_290 Hb_000331_680 Hb_000331_680 Hb_003747_100--Hb_000331_680 Hb_000077_140 Hb_000077_140 Hb_003747_100--Hb_000077_140 Hb_003504_030 Hb_003504_030 Hb_003747_100--Hb_003504_030 Hb_003747_100--Hb_000964_130 Hb_002234_170 Hb_002234_170 Hb_002783_040--Hb_002234_170 Hb_002798_070 Hb_002798_070 Hb_002783_040--Hb_002798_070 Hb_002783_040--Hb_000061_030 Hb_002253_080 Hb_002253_080 Hb_002783_040--Hb_002253_080 Hb_009150_020 Hb_009150_020 Hb_002783_040--Hb_009150_020 Hb_001322_130 Hb_001322_130 Hb_002783_040--Hb_001322_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5469 26.4009 14.8451 17.0744 11.7965 15.5078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5369 12.8807 15.8282 8.84355 19.5589

CAGE analysis