Hb_006275_020

Information

Type -
Description -
Location Contig6275: 16783-25780
Sequence    

Annotation

kegg
ID rcu:RCOM_0754340
description hypothetical protein
nr
ID XP_012074039.1
description PREDICTED: VIN3-like protein 2 [Jatropha curcas]
swissprot
ID Q9SUM4
description VIN3-like protein 2 OS=Arabidopsis thaliana GN=VIL2 PE=1 SV=1
trembl
ID A0A067KJH6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08655 PE=4 SV=1
Gene Ontology
ID GO:0005515
description vin3-like protein 2 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51731: 16649-23092
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006275_020 0.0 - - PREDICTED: VIN3-like protein 2 [Jatropha curcas]
2 Hb_000120_130 0.0618905826 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
3 Hb_001500_060 0.0646729345 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein ZFN-like [Jatropha curcas]
4 Hb_000015_170 0.0658788912 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000103_340 0.069038926 - - PREDICTED: uncharacterized protein LOC105632051 isoform X4 [Jatropha curcas]
6 Hb_000061_030 0.0755762627 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
7 Hb_001761_120 0.0832421403 - - hypothetical protein JCGZ_22564 [Jatropha curcas]
8 Hb_001717_010 0.0874593849 - - F-box and wd40 domain protein, putative [Ricinus communis]
9 Hb_000340_420 0.087992317 - - PREDICTED: LEC14B protein isoform X2 [Jatropha curcas]
10 Hb_000181_340 0.0884549672 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
11 Hb_001279_040 0.0896798212 - - PREDICTED: probable carboxylesterase 11 [Jatropha curcas]
12 Hb_000029_060 0.0900432507 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
13 Hb_002157_080 0.0902307783 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
14 Hb_010068_080 0.0909183719 - - PREDICTED: RNA-binding protein rsd1-like [Jatropha curcas]
15 Hb_001716_020 0.0912210408 - - hydrolase, putative [Ricinus communis]
16 Hb_001863_360 0.0919950904 - - PREDICTED: 5'-adenylylsulfate reductase-like 4 [Jatropha curcas]
17 Hb_004916_010 0.0921178537 - - PREDICTED: uncharacterized protein LOC105631086 [Jatropha curcas]
18 Hb_002329_020 0.0921575143 - - PREDICTED: uncharacterized protein LOC105648015 [Jatropha curcas]
19 Hb_000861_080 0.0924570552 - - PREDICTED: protein ELC-like [Jatropha curcas]
20 Hb_003894_120 0.092626554 - - PREDICTED: uncharacterized protein LOC105643110 [Jatropha curcas]

Gene co-expression network

sample Hb_006275_020 Hb_006275_020 Hb_000120_130 Hb_000120_130 Hb_006275_020--Hb_000120_130 Hb_001500_060 Hb_001500_060 Hb_006275_020--Hb_001500_060 Hb_000015_170 Hb_000015_170 Hb_006275_020--Hb_000015_170 Hb_000103_340 Hb_000103_340 Hb_006275_020--Hb_000103_340 Hb_000061_030 Hb_000061_030 Hb_006275_020--Hb_000061_030 Hb_001761_120 Hb_001761_120 Hb_006275_020--Hb_001761_120 Hb_000120_130--Hb_000015_170 Hb_000861_080 Hb_000861_080 Hb_000120_130--Hb_000861_080 Hb_000808_030 Hb_000808_030 Hb_000120_130--Hb_000808_030 Hb_003747_100 Hb_003747_100 Hb_000120_130--Hb_003747_100 Hb_002783_040 Hb_002783_040 Hb_000120_130--Hb_002783_040 Hb_003531_080 Hb_003531_080 Hb_001500_060--Hb_003531_080 Hb_000340_420 Hb_000340_420 Hb_001500_060--Hb_000340_420 Hb_001500_060--Hb_000120_130 Hb_001500_060--Hb_001761_120 Hb_000227_270 Hb_000227_270 Hb_001500_060--Hb_000227_270 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000015_170--Hb_000061_030 Hb_000025_730 Hb_000025_730 Hb_000015_170--Hb_000025_730 Hb_000214_050 Hb_000214_050 Hb_000103_340--Hb_000214_050 Hb_000635_090 Hb_000635_090 Hb_000103_340--Hb_000635_090 Hb_001018_090 Hb_001018_090 Hb_000103_340--Hb_001018_090 Hb_005214_140 Hb_005214_140 Hb_000103_340--Hb_005214_140 Hb_170416_010 Hb_170416_010 Hb_000103_340--Hb_170416_010 Hb_002329_020 Hb_002329_020 Hb_000061_030--Hb_002329_020 Hb_000061_030--Hb_002783_040 Hb_002267_140 Hb_002267_140 Hb_000061_030--Hb_002267_140 Hb_002263_040 Hb_002263_040 Hb_000061_030--Hb_002263_040 Hb_002843_120 Hb_002843_120 Hb_000061_030--Hb_002843_120 Hb_001761_120--Hb_170416_010 Hb_001761_120--Hb_003531_080 Hb_007290_030 Hb_007290_030 Hb_001761_120--Hb_007290_030 Hb_004052_080 Hb_004052_080 Hb_001761_120--Hb_004052_080 Hb_000339_040 Hb_000339_040 Hb_001761_120--Hb_000339_040 Hb_001761_120--Hb_000103_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2027 24.1473 20.4891 17.0131 9.94145 14.4918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.197 13.0482 18.516 8.09244 20.3659

CAGE analysis